View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_34 (Length: 306)
Name: NF14200_low_34
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 39411773 - 39411487
Alignment:
| Q |
1 |
ccaacgaagtgacgttaaggcagtgccctaacattagtttcaaatctgtcatggtattgttgaatgccttatatatagcaacctgttaccttgaaatggc |
100 |
Q |
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| T |
39411773 |
ccaacgaagtgacgttaaggcagtgccctaacattagtttcaaatctgtcatggtattgttgaatgccttatatatagcaacctgttaccttgaaatggc |
39411674 |
T |
|
| Q |
101 |
ataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411673 |
ataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctat |
39411574 |
T |
|
| Q |
201 |
gaacatttcatccacttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaac |
287 |
Q |
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| T |
39411573 |
gaacatttcatccacttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaac |
39411487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 39403473 - 39403345
Alignment:
| Q |
88 |
accttgaaatggcataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcaggga |
187 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| || | |
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| T |
39403473 |
accttgagatggcataaagatgaacttacgatctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaattagata |
39403374 |
T |
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| Q |
188 |
acaaactttctatgaacatttcatccact |
216 |
Q |
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| T |
39403373 |
ccaaactttctatgaacatttcattcact |
39403345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 287
Target Start/End: Complemental strand, 47927367 - 47927193
Alignment:
| Q |
113 |
ttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatc |
212 |
Q |
| |
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|||||||||||||| ||||| ||||||| | |||| || ||||| | ||||||||||| ||| ||||| || |||||||||||||||||||||||||| |
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| T |
47927367 |
ttactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacatttcatc |
47927268 |
T |
|
| Q |
213 |
cacttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaac |
287 |
Q |
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| T |
47927267 |
cacttttacttcattaagtgaaagatatgtcaaattcttgaatggaataaagtcacaattggttggattgcaaac |
47927193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 48453940 - 48454026
Alignment:
| Q |
131 |
atgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatccactt |
217 |
Q |
| |
|
|||||||||| | |||| || |||||| ||||||||||| ||||||||| || |||||||||| ||||| ||||||||||||| |
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|
| T |
48453940 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccactt |
48454026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 48108030 - 48108155
Alignment:
| Q |
89 |
ccttgaaatggcataaagatgatcttactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaa |
188 |
Q |
| |
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|||||| ||| |||| |||||| |||||||||| ||| || ||||||| || | |||| || |||| | |||||||||||| || |||||| || || |
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| T |
48108030 |
ccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaagtaagcaaagctcttcaagttgtggacaattagataa |
48108129 |
T |
|
| Q |
189 |
caaactttctatgaacatttcatcca |
214 |
Q |
| |
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||||||||| ||||| ||||||||| |
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|
| T |
48108130 |
caaactttcaatgaaagtttcatcca |
48108155 |
T |
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