View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_35 (Length: 306)
Name: NF14200_low_35
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 17412435 - 17412170
Alignment:
| Q |
24 |
atagtttgaacctaaccgtccatcattaacctatttttgcttttaaagaaatgaatctgtaaattgttcttatgaattcgagtttcctagtagcttctga |
123 |
Q |
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| T |
17412435 |
atagtttgaacctaaccgtccatcattaacctatttttgcttttaaagaaatgaatctgtaaattgttgttatgaattcgagtttcctagtagcttctga |
17412336 |
T |
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| Q |
124 |
acttgttttgtgactttacagagagaacatgatgaattgaaggcaaagttttttgaggagagagcagctcttgaagccaaataccaattattgtatcaac |
223 |
Q |
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| T |
17412335 |
acttgttttgtgactttacagaaagaacatgatgatttgaaggcaaagttttttgaggagagagcagctcttgaagccaaataccaattattgtatcaac |
17412236 |
T |
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| Q |
224 |
cattgtacacaaaggtatcttgatcggattcttgccattgattgttcgattattcacgtttaatat |
289 |
Q |
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| T |
17412235 |
cattgtacacaaaggtatcttgatcggattcttgccattgattgttcgattattcacgtttaatat |
17412170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 17391983 - 17391854
Alignment:
| Q |
117 |
cttctgaacttgttttgtgactttacagagagaacatgatgaattgaaggcaaagttttttgaggagagagcagctcttgaagccaaataccaattattg |
216 |
Q |
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| T |
17391983 |
cttctgaaattgttttatgactgtgcagggtgaacatgatgaattggaggctaagtttttggaggagagagcagctcttgaagccaaataccaaaaattg |
17391884 |
T |
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| Q |
217 |
tatcaaccattgtacacaaaggtatcttga |
246 |
Q |
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| T |
17391883 |
tatcaaccattgtacacaaaggtatcttga |
17391854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 17407002 - 17406902
Alignment:
| Q |
142 |
cagagagaacatgatgaattgaaggcaaagttttttgaggagagagcagctcttgaagccaaataccaattattgtatcaaccattgtacacaaaggtat |
241 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
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| T |
17407002 |
cagagagaacatgatgaattgaaggaaaagtttttggaggagagagcagctcttgaagccaaataccaattattgtatcaaccattgttcgctaaggtat |
17406903 |
T |
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| Q |
242 |
c |
242 |
Q |
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| T |
17406902 |
c |
17406902 |
T |
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