View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14200_low_38 (Length: 283)

Name: NF14200_low_38
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14200_low_38
NF14200_low_38
[»] chr7 (1 HSPs)
chr7 (15-266)||(3417549-3417800)
[»] chr5 (2 HSPs)
chr5 (15-266)||(12540591-12540842)
chr5 (15-266)||(28385240-28385491)
[»] chr2 (3 HSPs)
chr2 (18-239)||(13448296-13448517)
chr2 (23-239)||(13440133-13440349)
chr2 (21-239)||(13454767-13454985)
[»] chr4 (3 HSPs)
chr4 (15-239)||(48965262-48965486)
chr4 (18-235)||(48958081-48958298)
chr4 (86-239)||(48912438-48912591)
[»] chr6 (2 HSPs)
chr6 (18-235)||(12483492-12483709)
chr6 (18-157)||(12590197-12590336)
[»] scaffold0536 (2 HSPs)
scaffold0536 (18-230)||(10518-10730)
scaffold0536 (18-219)||(6536-6737)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 3417549 - 3417800
Alignment:
Q  15 ggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3417549 ggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtagggggatttatgacacattgtggggggaactcat 3417648  T
Q  115 tcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattgg 214  Q
    | || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3417649 ttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagtccgaggaattgg 3417748  T
Q  215 agtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaag 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417749 agtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaag 3417800  T

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Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 12540842 - 12540591
Alignment:
Q  15 ggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcat 114  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||     
T  12540842 ggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaa 12540743  T
Q  115 tcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattgg 214  Q
    | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||| || |||||||||||    
T  12540742 ttgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattgg 12540643  T
Q  215 agtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaag 266  Q
    ||| ||||||||||||||||||||| || || |||||| |||||||||||||    
T  12540642 agtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaag 12540591  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 28385491 - 28385240
Alignment:
Q  15 ggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcat 114  Q
    |||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| | |||||||| ||||||||| |||||||||| || |||||||||     
T  28385491 ggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggagggaactcaa 28385392  T
Q  115 tcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattgg 214  Q
    | |||||||||||| | ||||||||||||||||||||||||||  |||||| |||||| ||   |||||||||| | ||||||  ||| ||| |||||||    
T  28385391 ttgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattgg 28385292  T
Q  215 agtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaag 266  Q
    |||||||||||||| ||| |||||| || || |||||| |||||||||||||    
T  28385291 agtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaag 28385240  T

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Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 13448517 - 13448296
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| ||||| ||||||||||||  ||    
T  13448517 aagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg 13448418  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||| | ||||||||||||||    
T  13448417 tagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccgaggaattggagt 13448318  T
Q  218 ggaagtaggtgcaacagaatgg 239  Q
     ||||| |||||||||||||||    
T  13448317 tgaagtcggtgcaacagaatgg 13448296  T

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Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 13440349 - 13440133
Alignment:
Q  23 gggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagag 122  Q
    |||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| | ||||||    
T  13440349 gggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtggggggatttatgacgcattgcggggggaactcaattgtagag 13440250  T
Q  123 gctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaag 222  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||  |||||||| |||||||||||||||||||||    
T  13440249 tctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaag 13440150  T
Q  223 taggtgcaacagaatgg 239  Q
    | |||||||| ||||||    
T  13440149 tcggtgcaacggaatgg 13440133  T

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Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 13454985 - 13454767
Alignment:
Q  21 aagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtag 120  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||| || ||||| || |||||||||||||| ||||| |||||||||||| ||||||    
T  13454985 aagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtggggggatttatgacgcattgcggggggaactcaatcgtag 13454886  T
Q  121 aggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtgga 220  Q
    ||||||||||   |||||||||||||||||||||||| |  |||||||||||||| | ||| ||||||||||||||||||||||||||||||||| | ||    
T  13454885 aggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattga 13454786  T
Q  221 agtaggtgcaacagaatgg 239  Q
    ||| |||||||||||||||    
T  13454785 agtcggtgcaacagaatgg 13454767  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 48965486 - 48965262
Alignment:
Q  15 ggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcat 114  Q
    |||||||||||||||||  ||||||||||||| || ||||||| |||  ||||||| || || || || |  |||||||| ||||||||  |||||||      
T  48965486 ggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgcctttatgactcattgtggttggaactcca 48965387  T
Q  115 tcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattgg 214  Q
      || ||||||||| ||||||| ||||| ||||| || |||||    |||||||| ||||| | ||| || ||||| |||||| |||| ||||| |||||    
T  48965386 cagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattgg 48965287  T
Q  215 agtggaagtaggtgcaacagaatgg 239  Q
    ||||||||| |||||||||||||||    
T  48965286 agtggaagttggtgcaacagaatgg 48965262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 48958298 - 48958081
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    ||||| ||||||||| ||||||| ||||||||||| |||  |||  |||||||   ||| || || | ||||||||||||||| ||| |||||||    |    
T  48958298 aagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtgggtgcatttatgacacattgcgggtggaactccactg 48958199  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 217  Q
    | ||||||||||| ||||| ||||||||||| ||||||||||  |||||||| ||||| | |||||||||  | |||||  | || ||||||||||| ||    
T  48958198 tggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgataactaatgtgcgaggaattggggt 48958099  T
Q  218 ggaagtaggtgcaacaga 235  Q
    ||| || |||||||||||    
T  48958098 ggaggttggtgcaacaga 48958081  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 48912438 - 48912591
Alignment:
Q  86 atttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag 185  Q
    ||||||||||||||||||| |||| ||    || ||||| |||||||| || ||||||||||| |||||||||   |||||||| || || | |||||||    
T  48912438 atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgag 48912537  T
Q  186 aaactaataacacaagttcgaggaattggagtggaagtaggtgcaacagaatgg 239  Q
    ||  | |||||||| || |  || ||||| ||||| || |||||||| ||||||    
T  48912538 aagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatgg 48912591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 12483492 - 12483709
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    |||| |||||| ||| | ||||| ||||| |||||||| | ||| |||||||| ||||| || || | ||||||||| || |||||  |||| ||  | |    
T  12483492 aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg 12483591  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 217  Q
    | || || |||||||| ||  |||||||||| |||||||||| ||| || || || || | |||||||||||| |||||  | || ||||| ||||| ||    
T  12483592 tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgt 12483691  T
Q  218 ggaagtaggtgcaacaga 235  Q
    |||||| |||||||||||    
T  12483692 ggaagtcggtgcaacaga 12483709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 12590197 - 12590336
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    ||||||||||||||| ||||||||||||||||||| ||   |||  |||||||   ||| || || |  |||||||||||||||||  |||| ||  |||    
T  12590197 aagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtcg 12590296  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggcc 157  Q
    | ||||| |||||||| ||| |||| ||||| || |||||    
T  12590297 tggaggcggttagtgctggaattccgatgatcacatggcc 12590336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 10518 - 10730
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    ||||||||||||||  ||| |||||||||||| ||||||  |||  | |||||  |||  || || |  |||||||||||||||||| |||| ||   ||    
T  10518 aagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccaccg 10617  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 217  Q
    | ||||| |||||||| || ||||||||||| ||||||||    |||||||| ||||| | |||||||||  | ||||| ||||| || || ||||| |     
T  10618 tggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataacgcaagtgcgggggattggggg 10717  T
Q  218 ggaagtaggtgca 230  Q
    |||||| ||||||    
T  10718 ggaagtgggtgca 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 6536 - 6737
Alignment:
Q  18 aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcg 117  Q
    ||||||||||||||  ||||||||||||| ||||| |||  ||| ||||||||    ||  | || |  |||||||| ||||||||| |||| ||    |    
T  6536 aagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctctgggtgcgtttatgacgcattgtgggtggaattccactg 6635  T
Q  118 tagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagt 217  Q
    | |||||||||||||| || ||||| ||||| ||||||||||  |||||||| ||||| | |||||| ||  | |||||||| || ||| ||||||| ||    
T  6636 ttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataacacaggtgcgacgaattggggt 6735  T
Q  218 gg 219  Q
    ||    
T  6736 gg 6737  T

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