View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_43 (Length: 259)
Name: NF14200_low_43
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20208683 - 20208921
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcattccattctttctct |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20208683 |
caacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcattccattctttctct |
20208782 |
T |
|
| Q |
101 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20208783 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgg |
20208882 |
T |
|
| Q |
201 |
gttgataatcgattcctgatgaaactctaatatgagttg |
239 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
20208883 |
gttgataatcgattcttgatgaaactctaatatgagttg |
20208921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 20228440 - 20228629
Alignment:
| Q |
50 |
acaaaccatcagcgcaccctcctcttctcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatg |
149 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20228440 |
acaaaccatcagcgcaccctcctcttttcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatg |
20228539 |
T |
|
| Q |
150 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttg |
239 |
Q |
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| T |
20228540 |
aatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttg |
20228629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20211951 - 20211999
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
49 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
20211951 |
caacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
20211999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44293195 - 44293433
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttctcggtttcattccattctttctct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44293195 |
caacaaaaatgaaaatgtgcatgcataccttcatcgtcactctcgtcaaacaaaccatcagcgcaccctcctcttttcggtttcattccattctttctct |
44293294 |
T |
|
| Q |
101 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcatacgtcgg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44293295 |
aattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgtagccacaatatccggtctccttgaagtctttgcataggtcgg |
44293394 |
T |
|
| Q |
201 |
gttgataatcgattcctgatgaaactctaatatgagttg |
239 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
44293395 |
gttgataatcgattcttgatgaaactctaatatgagttg |
44293433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 44484498 - 44484660
Alignment:
| Q |
74 |
ttctcggtttcattccattctttctctaattgccacccggacttgtaatcagttcggtcgtgcaaaaacttgcatgaatcgccgta-gccacaatatccg |
172 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
44484498 |
ttctcggtttccctccattccttatccaattgcca----gacttgtaatcggttcggtcgtgcaaaaacttacatgaatcgttgtatgccacaatatcca |
44484593 |
T |
|
| Q |
173 |
gtctccttgaagtctttgcatacgtcgggttgataatcgattcctgatgaaactctaatatgagttg |
239 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44484594 |
gtctccttgaagtctttgcataggtcgggttgataatcgattcttgatgaaactctaatatgagttg |
44484660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44296463 - 44296511
Alignment:
| Q |
1 |
caacaaaaatgaaaatgtgcatgcataccatcatcgtcactctcgtcaa |
49 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
44296463 |
caacaaaaatgaaaatgtgaatgcataccttcatcgtcactctcgtcaa |
44296511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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