View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_5 (Length: 608)
Name: NF14200_low_5
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 32 - 420
Target Start/End: Complemental strand, 22357478 - 22357084
Alignment:
| Q |
32 |
gacatgtttacttatttataccaccaacgagg-tctttatattgaaagtggagtttaaatttagattgttaataacatatgagtcgaa---tcattatca |
127 |
Q |
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| T |
22357478 |
gacatgtttacttatttataccactaacgagggtctttatattgacaatggagtttaaattaagattgttagtaacatatgagtcgacgactgattatca |
22357379 |
T |
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| Q |
128 |
actgaatcaacttttgctgattgaacttaatttatataaactagtttgtccaaaactgttattttaagtagaaaagcatgatg---gttgcttaattaca |
224 |
Q |
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| T |
22357378 |
actgaatcaacttttgttggttgagcttaatttatataaactagtttgtccaaaactgttattttaagtagaaaagcatgatgatggttgcttaattaca |
22357279 |
T |
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| Q |
225 |
aagtctttctattattgctatttgtttgttgaatgatcaatttttggctttctttgaatgattattatctagtagtgataagtgatggggaatgcatata |
324 |
Q |
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| T |
22357278 |
aagtctttctattattgctatttgtttgttgaatgatcaatttttggctttctt-gaatgattattatctagtagtgataagtgatggggaatgcatata |
22357180 |
T |
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| Q |
325 |
gtggaatatagtgtgtagacttgattgctttcattacctggaaagatgcataagctggaattggaagtccctacaaacatcatcatgctttcaatg |
420 |
Q |
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| T |
22357179 |
gtggaatatagtgtgtagacttgattgctttcattacctggaaagatgcataagctggaattggaagtccctacagacatcatcatgctttcaatg |
22357084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 472 - 592
Target Start/End: Complemental strand, 22357031 - 22356911
Alignment:
| Q |
472 |
atgtagggccaaagttgtttttaatatgaatttgtagagccatgatagttgagttgagtgtatgatttgaagcatgaggaaaaataataagaggataaaa |
571 |
Q |
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| T |
22357031 |
atgtagggccaaagttgtttttaatatgaatttgtagagccatgatagttgagttgagtgtatgatttgaagcatgaggaaaaataataagaggataaaa |
22356932 |
T |
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| Q |
572 |
tgcatttataaggtatgtgtg |
592 |
Q |
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| T |
22356931 |
tgcatttataaggtatgtgtg |
22356911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 196 - 318
Target Start/End: Complemental strand, 22357986 - 22357859
Alignment:
| Q |
196 |
tagaaaagcatgatggttgcttaattacaaagtctttctattattgctatttgtttgttgaatgatcaatttttggctttctttgaatgat---tattat |
292 |
Q |
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| T |
22357986 |
tagaaaagcacgatggttgcctaattacaaagtcttgctattgttgctagttgtttgttgaatgatcaatttttggctttcttt-aatgattagtattat |
22357888 |
T |
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| Q |
293 |
ctag---tagtgataagtgatggggaatg |
318 |
Q |
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| T |
22357887 |
ctagtactagtgataagtgatggggaatg |
22357859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 22358227 - 22358119
Alignment:
| Q |
12 |
agaatatctaaaaaagcgttgacatgtttacttatttat-accaccaacgaggtctttatattgaaagtggagtttaaatttagattgttaataacatat |
110 |
Q |
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| T |
22358227 |
agaaaatctaaaaaggtgttgacatgtatacttatttattaccaccgatgaggtcttcatattgacagtagagtttaaattt-gattgttattaacacat |
22358129 |
T |
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| Q |
111 |
gagtcgaatc |
120 |
Q |
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| T |
22358128 |
gagtcgaatc |
22358119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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