View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_50 (Length: 217)
Name: NF14200_low_50
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_50 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 35129832 - 35130010
Alignment:
| Q |
19 |
agagtataaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaatt |
118 |
Q |
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| T |
35129832 |
agagtataaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcagcacaactccataatattgtaaataaagaaataaaatt |
35129931 |
T |
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| Q |
119 |
acaacattaaacaagttacatttgtcatacatcaatccatgttgtgtctcacatcatcatgcacaattctgctgaattgtttg |
201 |
Q |
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| T |
35129932 |
acaacattaaacaagttacatttgtcatac----atccatgttgtgtctcacatcatcatgcacaactctgctgaattgtttg |
35130010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 35137051 - 35137200
Alignment:
| Q |
26 |
aaccatcccatagttggattgaataagatcatgtcaaatagcatttgactctgcaccacaactccataatattgtaaatcaagaaataaaattacaacat |
125 |
Q |
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| T |
35137051 |
aaccatcccatagttggattgaataagatcatgccaaatagaatttaactctgtaacacacctccataatattttaaatcaagaaataaaattacaacat |
35137150 |
T |
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| Q |
126 |
taaacaagttacatttgtcatacatcaatccatgttgtgtctcacatcat |
175 |
Q |
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| T |
35137151 |
taaacaagttactttttgtactcatacatccatgttgtgtctcacatcat |
35137200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 387 - 341
Alignment:
| Q |
89 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
135 |
Q |
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| T |
387 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 14276565 - 14276611
Alignment:
| Q |
89 |
ccataatattgtaaatcaagaaataaaattacaacattaaacaagtt |
135 |
Q |
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| T |
14276565 |
ccatagtattttaaatcaagaaataaaattacaacaataaacaagtt |
14276611 |
T |
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