View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14200_low_6 (Length: 554)

Name: NF14200_low_6
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14200_low_6
NF14200_low_6
[»] chr5 (2 HSPs)
chr5 (33-299)||(41968926-41969181)
chr5 (339-538)||(41969222-41969418)
[»] chr3 (2 HSPs)
chr3 (362-538)||(1236305-1236482)
chr3 (213-299)||(1236150-1236237)
[»] chr1 (2 HSPs)
chr1 (33-179)||(3722450-3722597)
chr1 (35-169)||(32953608-32953742)
[»] chr8 (2 HSPs)
chr8 (33-114)||(35739690-35739771)
chr8 (33-105)||(37080806-37080878)
[»] chr7 (1 HSPs)
chr7 (33-172)||(7805573-7805712)
[»] chr2 (1 HSPs)
chr2 (35-142)||(36033683-36033789)
[»] scaffold0011 (1 HSPs)
scaffold0011 (33-114)||(228870-228951)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 33 - 299
Target Start/End: Original strand, 41968926 - 41969181
Alignment:
Q  33 tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaa 132  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  41968926 tttatagatgagattttttaagtttatgaattcgtggttccatgcttgagtattgttacattggaaaag-----------aagaacctataacgaataaa 41969014  T
Q  133 gtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttggcagcatccataacaatcgaaatcgcggaaaacccttgatcaagtttataaat 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  41969015 gtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttggcagcaccggtaacaatcgaaatcgcggaaaacccttgatcaagtttataaat 41969114  T
Q  233 attatacttgtgattcacatatttaaaggaaaaacttatatccaaaaataaaattatggacgaaggt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969115 attatacttgtgattcacatatttaaaggaaaaacttatatccaaaaataaaattatggacgaaggt 41969181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 339 - 538
Target Start/End: Original strand, 41969222 - 41969418
Alignment:
Q  339 gataaatatgcatagcataataatatgtcgatttaccttgctctgtacaagaagaaacaacacaactaagaagagcatattgatgttataattttttgcc 438  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  41969222 gataaatattcatagcataataatatgtcgatttaccttgctctgtacaagaagaaaca---caactaagaagagcatattgatgttataattttttgcc 41969318  T
Q  439 attactcaaagctttacgaaacgcaaaaaagttatgtgaattgtgattatgaagaaacgttgagttacgtatttatagcatttctacttgaactgaatct 538  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969319 attactcaaagctttacgaaaagcaaaaaagttatgtgaattgtgattatgaagaaacgttgagttacgtatttatagcatttctacttgaactgaatct 41969418  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 362 - 538
Target Start/End: Original strand, 1236305 - 1236482
Alignment:
Q  362 tatgtcgatttaccttgctctgtacaagaagaaacaacacaactaagaagagcatattgatgttataattttttgccattactcaaagctttacgaaacg 461  Q
    |||||| || ||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  1236305 tatgtcaatataccttgctttgtacaagaagaaaca---caactaagaagagcatattgatgttataattttttgccattactcaaagctttactaaaag 1236401  T
Q  462 caaaaaagttatgtgaattgtgattatgaagaaac---gttgagttacgtatttatagc-atttctacttgaactgaatct 538  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||| | |||||| ||||||||||||    
T  1236402 caaaaaagttatgtgaattgtgattatgaagaagaattgttgagttacgtatttatagcaaattctacatgaactgaatct 1236482  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 1236150 - 1236237
Alignment:
Q  213 ccttgatcaagtttataaatattatacttgtgattcacatatttaaagg-aaaaacttatatccaaaaataaaattatggacgaaggt 299  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||| |||||||||    
T  1236150 ccttcatcaagttaataaatattatacttgtgattcacatgtttaaaggaaaaaatttatatacaaaaataaaattatagacgaaggt 1236237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 3722597 - 3722450
Alignment:
Q  33 tttagagatgagattttttaa-gtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataa 131  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||  ||  |||  || ||||||||||||||||||||||||||||||||||| ||||||    
T  3722597 tttagagatgagatttttttatgtttatgaattagtggttccataattcggtaccgtgacattggaaaagaagtgagaaagaagaacctataaagaataa 3722498  T
Q  132 agtgaggtgagtgggagtaaatggtgagggtaattgtgcaatgttttg 179  Q
     |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  3722497 tgtgaggtgagtgagaggaaatggtgagggtaattgtgcaatgttttg 3722450  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 32953608 - 32953742
Alignment:
Q  35 tagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaagt 134  Q
    ||||||||||||||||   ||||||||||| || ||| | || || | |||||| |||||| |||| |||| |||||| | |||||  || |||||||||    
T  32953608 tagagatgagatttttggtgtttatgaattcgttgttgcttgtttcaatattgtgacattgaaaaataagtaagaaagtaaaacctggaaagaataaagt 32953707  T
Q  135 gaggtgagtgggagtaaatggtgagggtaattgtg 169  Q
    | |||||||| |||||| |||||| ||||||||||    
T  32953708 ggggtgagtgagagtaactggtgaaggtaattgtg 32953742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 35739690 - 35739771
Alignment:
Q  33 tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaa 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||    
T  35739690 tttagagatgagattttttatgtttatgaatttgtggttccatgcttcagttctgtgacattggaaaagaagttagaaagaa 35739771  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 37080878 - 37080806
Alignment:
Q  33 tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagt 105  Q
    ||||||||||||||| ||   |||||||||||||||||| | ||||| |||||||| ||| ||||||||||||    
T  37080878 tttagagatgagattattggtgtttatgaatttgtggttgcttgcttcagtattgtgacaatggaaaagaagt 37080806  T

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Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 7805712 - 7805573
Alignment:
Q  33 tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaa 132  Q
    |||||||||| |||||||   ||||||||||| || ||| | ||||| ||||| || ||||||||||||||||  |||||||||||||  ||  ||||||    
T  7805712 tttagagatgggatttttggtgtttatgaattcgtagttgcttgcttcagtatcgtgacattggaaaagaagtttgaaagaagaacctcgaaataataaa 7805613  T
Q  133 gtgaggtgagtgggagtaaatggtgagggtaattgtgcaa 172  Q
    |||||||||||  ||| || ||||||||||||||||||||    
T  7805612 gtgaggtgagttagagaaagtggtgagggtaattgtgcaa 7805573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 36033683 - 36033789
Alignment:
Q  35 tagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaagaacctataacgaataaagt 134  Q
    ||||||||||||||||   ||||||||||| |||||| | ||||| |||| ||| |||||| |||||||||||| ||| |||||||  || |||||||||    
T  36033683 tagagatgagatttttgt-gtttatgaattcgtggttgcttgcttcagtaatgtgacattgaaaaagaagtgagtaagtagaacctggaaagaataaagt 36033781  T
Q  135 gaggtgag 142  Q
    | ||||||    
T  36033782 ggggtgag 36033789  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 228951 - 228870
Alignment:
Q  33 tttagagatgagattttttaagtttatgaatttgtggttccatgcttgagtattgttacattggaaaagaagtgagaaagaa 114  Q
    |||||||||||||| |||   ||||||||||  |||||| | ||||| ||||  || |||||||||||||| ||||||||||    
T  228951 tttagagatgagatatttggtgtttatgaatccgtggttgcttgctttagtacagtgacattggaaaagaaatgagaaagaa 228870  T

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