View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_7 (Length: 546)
Name: NF14200_low_7
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 37727828 - 37727377
Alignment:
| Q |
6 |
agtaattagcaaattgagttaatgaagagtgtctggtttagtagtagtcaaatttgctaatttggtcatttctatgaatttcagctaaaaagtctagcac |
105 |
Q |
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| T |
37727828 |
agtaattagcaaatttagttaatgaagagtgtctggtttagtagtagtcaaatttgctaatttggtcatttctatgaatttcagctaaaaagtatagcac |
37727729 |
T |
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| Q |
106 |
ttgtttccttgaactgtgttatcagctaacaatagttatatgtattcgattca---gaaactatgggctctcctttttgtattgacgtggaattcaagta |
202 |
Q |
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| T |
37727728 |
ttgtttccttgaactgtgttatcagctaacaatagttatatgtattcgattcatcagaaactatgggctttcctttttgtattgacgtggaattcaagta |
37727629 |
T |
|
| Q |
203 |
attgtgcatttcccactccagctacttggacaagaggtattgattgtctgtttgctttttagtgaaattttgatcgcaaatgaaactatttcaaacctag |
302 |
Q |
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| T |
37727628 |
attgtgcatttcccactccagctacttggacaagaggtattgattgtctgtttgctttttagtgaaattttgatcgcaaatgaaactatttcaaacctag |
37727529 |
T |
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| Q |
303 |
tcaacgagaaagtggttcttcgattttaaacttgtataatgtatatggttgttttcttattcattcaaaacagttagtttgtcgaatacgtttccttctg |
402 |
Q |
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| T |
37727528 |
tcaacgagaaagtggttcttcgattttaaacttgtataatgtatatggttgttttcttattcattcaaaacagttagtttgtcgaatacgtttccttctg |
37727429 |
T |
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| Q |
403 |
gaccttgatgaaaatttgactgccaaattctgtggctaatctccagcatacg |
454 |
Q |
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| T |
37727428 |
gaccttgatgaaaatttgactgccaaattctgtggctaatctccagcatacg |
37727377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 15161402 - 15161306
Alignment:
| Q |
105 |
cttgtttccttgaactgtgttatcagctaacaatagttatatgtattcgattcagaaactatgggctctcctttttgtattgacgtggaattcaagt |
201 |
Q |
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|||||||| ||||||||||| || ||||||||||||| ||| |||| |||||||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
15161402 |
cttgtttctgtgaactgtgttctctgctaacaatagttctatctatttgattcagaaactataggttctcctttttgtattgatgtggaattcaagt |
15161306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 29491382 - 29491414
Alignment:
| Q |
50 |
tagtcaaatttgctaatttggtcatttctatga |
82 |
Q |
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| T |
29491382 |
tagtcaaatttgccaatttggtcatttctatga |
29491414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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