View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_8 (Length: 543)
Name: NF14200_low_8
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 48461547 - 48461028
Alignment:
| Q |
8 |
catcatcatcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactatagtagacacatcactctttactcacatctt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48461547 |
catcatcatcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactacagtagacacatcactctttactcacatctt |
48461448 |
T |
|
| Q |
108 |
ctactcattcctcacacccaacaacatcacctacaaacttgaaatttcatcttctcaaatcttatccctcaacactttcaccaaaaccttcaaaaccaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48461447 |
ctactcattcctcacacccaacaacatcacctacaaacttgaaatttcatcttctcaaatcttatccctcaacactttcaccaaaaccttcaaaacaaaa |
48461348 |
T |
|
| Q |
208 |
tcccctcctgcagctactctcttttccattggaggtgcaggtagcaattcatccttgttcgccttcatcgcctccgatccaccctcacgttccgccttca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||||||||| |
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| T |
48461347 |
tcccctcctgcagctactctcttttccattggaggtgcaggtagcaattcatccttgttggccttcatcgcctccgatccacccgcatgtgccgccttca |
48461248 |
T |
|
| Q |
308 |
ttaactctacaatcaacgttgctcgtacatttggattcaatggaattgacttggattgggagtttcctaaaaacactaaagaaatgaacgacctcggaga |
407 |
Q |
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| T |
48461247 |
ttaactctacaatcgacgttgctcgtacatttggattcgatggaattgacttggattgggagtttcctaaaaacactaaagaaatgaacgacctcggaga |
48461148 |
T |
|
| Q |
408 |
attgctcttccaatggcgaaaagctatctccgatgaaggcgccaccaccggccggccaccattgcttctcacagccgctgtttacttcgctgtgaatttt |
507 |
Q |
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| T |
48461147 |
aatgctcttccaatggcgaaaagctatctccgatgaaggcgccaccaccggccggccaccgttgcttctcacagccgctgtttacttcgctgtgaatttt |
48461048 |
T |
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| Q |
508 |
tccatctacggtgaaccacg |
527 |
Q |
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|||||||||||||||||||| |
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| T |
48461047 |
tccatctacggtgaaccacg |
48461028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 172 - 523
Target Start/End: Complemental strand, 48455927 - 48455576
Alignment:
| Q |
172 |
tccctcaacactttcaccaaaaccttcaaaaccaaatcccctcctgcagctactctcttttccattggaggtgcaggtagcaattcatccttgttcgcct |
271 |
Q |
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||||||| ||||||||||| || |||||||| ||| ||||||| |||| ||| ||||||||||||||||| ||||||||| | | || || | |
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| T |
48455927 |
tccctcactactttcaccaacactttcaaaactaaaacccctcccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctt |
48455828 |
T |
|
| Q |
272 |
tcatcgcctccgatccaccctcacgttccgccttcattaactctacaatcaacgttgctcgtacatttggattcaatggaattgacttggattgggagtt |
371 |
Q |
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| T |
48455827 |
tcattgcctctgaccccacggcacgtgctaccttcatcaactctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtt |
48455728 |
T |
|
| Q |
372 |
tcctaaaaacactaaagaaatgaacgacctcggagaattgctcttccaatggcgaaaagctatctccgatgaaggcgccaccaccggccggccaccattg |
471 |
Q |
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||||| || ||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||| || ||||| |||| || ||||| |||||||||| ||| |
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| T |
48455727 |
tcctacaaccacaaaagaaatgaatgaccttggagaattgcttttccaatggcgaagagcaatttccgacgaagcaacctccaccagccggccacctttg |
48455628 |
T |
|
| Q |
472 |
cttctcacagccgctgtttacttcgctgtgaatttttccatctacggtgaac |
523 |
Q |
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|||||||| |||||||||||||| || || ||||||| | ||| |||||||| |
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|
| T |
48455627 |
cttctcaccgccgctgtttactttgccgttaattttttcctctccggtgaac |
48455576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 48456103 - 48456000
Alignment:
| Q |
8 |
catcatcatcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactatagtagacacatcactctttactcacatctt |
107 |
Q |
| |
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||||| ||||||||| ||||||||||||||| || |||||| ||||||| ||| ||||||||||| || |||| |||||||| || |||||||| || |
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| T |
48456103 |
catcaccatcatcaaccacacgtgtgaaaggcatatactggatagaaaacccacttttccctccatcttccatagatacatcacttttcactcacatttt |
48456004 |
T |
|
| Q |
108 |
ctac |
111 |
Q |
| |
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|||| |
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| T |
48456003 |
ctac |
48456000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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