View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14200_low_9 (Length: 477)
Name: NF14200_low_9
Description: NF14200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14200_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 4978353 - 4977906
Alignment:
| Q |
18 |
aaaacctgttatgactaaaatcaatctttgaaagctgttgcaaccttccaatctgagatggaattttaccctcaaacatgttaccatcaagcagaagctt |
117 |
Q |
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| T |
4978353 |
aaaacctgttatgactaaaatcaatctttgaaagctgttgcaaccttccaatctgagatggaattttaccctcaaacatgttaccatcaagcagaagctt |
4978254 |
T |
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| Q |
118 |
ctgcacgccggaaaaattcccaatagaaggaggcaaaggacctgagagttgattattcgacaaagtaatctgaccaagattaacagaaacagaatgagtc |
217 |
Q |
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| T |
4978253 |
ctgcacgcccgaaaaattcccaatagaaggaggcaaaggacctgagagttgattattcgacaaagtaatctgaccaagattaacagaaacagaatgagtc |
4978154 |
T |
|
| Q |
218 |
tcaggaaaatttccagataaataattatcttgaagctcaacctgactcaattttggtaatccaaacaaacccttaggaattgaaccattcaaaaaattat |
317 |
Q |
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| T |
4978153 |
tcaggaaaatttccagataaataattatcttgaagctcaacctgactcaattttggtaatccaaacaaacccttaggaattgaaccattgaaaaaatttt |
4978054 |
T |
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| Q |
318 |
cacccattcgaatccgagtcaatgattcacaaccaccaagagattcaggaattggaccgaacaaaaaattctcaagagttatcaaagtttgaagcatatt |
417 |
Q |
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| T |
4978053 |
cacccattcgaatccgagtcaatgattcacaaccaccaagagattcaggaattggaccgaacaaaaaattcccaagagttatcaaagtttgaagcatatt |
4977954 |
T |
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| Q |
418 |
accagaacacaaataaggtggaagtgttccagttaacttgtttgatga |
465 |
Q |
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| T |
4977953 |
cccagaacacaaataaggtggaagtgttccagttaacttgtttgatga |
4977906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 462
Target Start/End: Original strand, 40404961 - 40405399
Alignment:
| Q |
24 |
tgttatgactaaaatcaatctttgaaagctgttgcaaccttccaatctgagatggaattttaccctcaaacatgttaccatcaagcagaagcttctgcac |
123 |
Q |
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|||||||||||||||| ||||| |||||||| || ||| ||||||||| || || |||||||| |||| |||||||||||| | |||||| || || |
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| T |
40404961 |
tgttatgactaaaatctatcttagaaagctgatgtaactttccaatctcagcagggattttacctgaaaactggttaccatcaagtataagcttttgaac |
40405060 |
T |
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| Q |
124 |
gccggaaaaattcccaatagaaggaggcaaaggacctgagagttgattattcgacaaagtaatctgaccaagattaacagaaacagaatgagtctcagga |
223 |
Q |
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| T |
40405061 |
acttgtgaaattcccaatggaaggtggtaatggcccagaaagcttattgttggaaagagtaacttgaccaagatttatagacattgaaacaggttgagga |
40405160 |
T |
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| Q |
224 |
aaatttccagataaataattatcttgaagctcaacctgactcaattttggtaatccaaacaaacccttaggaattgaaccattcaaaaaattatcaccca |
323 |
Q |
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| T |
40405161 |
aagttaccagataaaagattatcttgaagctcaacttgtgtcaattcaggaagaccaaaaagtccttttggaattgacccattaagaaaattctcaccca |
40405260 |
T |
|
| Q |
324 |
ttcgaatccgagtcaatgattcacaaccaccaagagattcaggaattggaccgaacaaaaaattctcaagagttatcaaagtttgaagcatattaccaga |
423 |
Q |
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||| || | | |||| |||| ||| ||||| || || ||||| ||||| || | ||| ||| | | || |||||||||||||||| | |||||| | |
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| T |
40405261 |
ttcttattctattcaaagatttacactttccaagtgaatctggaataggaccaaaaagaaagttccctaaagctatcaaagtttgaagcttgttaccaaa |
40405360 |
T |
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| Q |
424 |
acacaaataaggtggaagtgttccagttaacttgtttga |
462 |
Q |
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||||| | |||||||||| | || |||||||||||||| |
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| T |
40405361 |
acacataaaaggtggaagagaaccggttaacttgtttga |
40405399 |
T |
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