View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14201_low_1 (Length: 690)
Name: NF14201_low_1
Description: NF14201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14201_low_1 |
 | |
|
| [»] scaffold0390 (1 HSPs) |
| | |
|
| [»] scaffold0786 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 675
Target Start/End: Original strand, 3004379 - 3005041
Alignment:
| Q |
20 |
gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgtt-ccttgattgaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3004379 |
gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggacgggacagatgctgatcaagtaaatgatgatgtttccttgattgaat |
3004478 |
T |
|
| Q |
117 |
tgttatcaaataactacacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttgctgaaaatttatgttgtgttttcaattatctt |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3004479 |
tgttatcaaataactaaacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttactgaaaatttatgttgtgttttcaattatctt |
3004578 |
T |
|
| Q |
217 |
gatctgtttaggcattgccccttcttcatcacattctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3004579 |
gatctgtttaggcattgccccttcttcatcacattctgttctacatgtattatgtctcccattttcatattatatcaagttgcaagtaatatgaattgag |
3004678 |
T |
|
| Q |
317 |
ttttaagatagttttctttgactgcgatattgcattaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004679 |
ttttaagatagttttctttgactgcgatattgcattaagagaacattgtttgccgatttaatcctatctgaaagaaagaagtgtctccatgggatatcaa |
3004778 |
T |
|
| Q |
417 |
atcaatatactactttatgtgatgacgatgatgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004779 |
atcaatatactactttatgtgatgacgatgatgtacatatcctaataaatattgggaggtggtcctttggagatgctaattttatagaaaattatgtttt |
3004878 |
T |
|
| Q |
516 |
tgtttcaggtaaaacttattcagaagacaatggaatagaaagttgtctgtggtt---agtgagacgaaagctttaaggttgtgactggtgcggttttcag |
612 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3004879 |
tgtttcaggtaaaacttattcaaaagacaatggaatagaaagttgtctgtggttataagtgagacgaaagctttaaggttgtgactggtgcggttttcgg |
3004978 |
T |
|
| Q |
613 |
acaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgctacctatg |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3004979 |
acaacagactgatgtggttcaactgtgttggcagtggtgatgtgctgcggtttgctacctatg |
3005041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 299 - 675
Target Start/End: Original strand, 54654663 - 54655040
Alignment:
| Q |
299 |
caagtaatatgaattgagttttaagatagttttctttgactgcgatattgcattaagagaacattgtttgccgatttaatcccatctgaaagaaagaagt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54654663 |
caagtaatatgaattgagttttaagatagttttctttgactacgatattgtatcaagagaacattgtttgtcgatttaatcccatctgaaagaaagaagt |
54654762 |
T |
|
| Q |
399 |
gtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacatatc-taataaatattgggagatggtcctttggagatgctaattt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54654763 |
gtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacatatcctaataaatattgggaggtggtcctttggagatgctaattt |
54654862 |
T |
|
| Q |
498 |
tatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaagttgtctgtggttagtgagacgaaagctttaaggttgtgac |
597 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54654863 |
tataaaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatacaaagctgtctgtggttagtgagacgaaagctttaaggttgtgac |
54654962 |
T |
|
| Q |
598 |
tggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgctacctatg |
675 |
Q |
| |
|
| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54654963 |
tagtgcggttttcagacagcagactgttgtggttcaactgtgttggcagtggtgatgtgctgcggtttgctacctatg |
54655040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 54654426 - 54654664
Alignment:
| Q |
20 |
gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgtt-ccttgattgaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
54654426 |
gtgtttagtggtgatatagagcacaaacaagatgggattgaattcaaccaggaggggacagatgctgatcaagacaatgatgatgtttccttgattgaat |
54654525 |
T |
|
| Q |
117 |
tgtt--------atcaaataactacacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttgctgaaaatttatgttgtgttttca |
208 |
Q |
| |
|
|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
54654526 |
tgttcacacatgattaaataactgaacatattagaagtctgaaaaagcaatctgttcaggttagtattcctccttcctgaaaatttatgttgtgttttca |
54654625 |
T |
|
| Q |
209 |
attatcttgatctgtttaggcattgccccttcttcatca |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54654626 |
attatcttgatctgtttaggccttgccccttcttcatca |
54654664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 356 - 492
Target Start/End: Complemental strand, 1065672 - 1065539
Alignment:
| Q |
356 |
agaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacata |
455 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| ||| |||||||| || || |||||| |
|
|
| T |
1065672 |
agaacaatgtttgccgatttgatcccatct----aaaagaagtgtctctttgggatatgaaatcaatatactattttttgtgatgatgactatatacata |
1065577 |
T |
|
| Q |
456 |
t-ctaataaatattgggagatggtcctttggagatgct |
492 |
Q |
| |
|
| ||||| |||||| |||| ||||| | |||||||||| |
|
|
| T |
1065576 |
tcctaattaatatttggaggtggtcttgtggagatgct |
1065539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 42094406 - 42094340
Alignment:
| Q |
253 |
tgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttt |
319 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
42094406 |
tgttctacatgtataatgtcttccattttcatattatttcaagttgcaagtaatttaaattgagttt |
42094340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 251 - 556
Target Start/End: Original strand, 51648950 - 51649252
Alignment:
| Q |
251 |
tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgca |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
51648950 |
tctgttctacatgtattatgtctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgca |
51649049 |
T |
|
| Q |
351 |
ttaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatg---a |
447 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |
|
|
| T |
51649050 |
tttagagaacattgtttgccgatttgatcccatct----gaaagaagtgtctccatgggatatcaaatcaatatacta---tatgtgatgatgatgatca |
51649142 |
T |
|
| Q |
448 |
tgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaat |
546 |
Q |
| |
|
||||||||| ||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51649143 |
tgtacatatcctaattaatatttagaggtggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagacaat |
51649242 |
T |
|
| Q |
547 |
ggaatagaaa |
556 |
Q |
| |
|
| ||||||| |
|
|
| T |
51649243 |
gacatagaaa |
51649252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 8505273 - 8505207
Alignment:
| Q |
251 |
tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagt |
317 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
8505273 |
tctgttctatatgtattatgtctcctattttcatacgatttcaagttgcaagtaatatgaattgagt |
8505207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 4866114 - 4866170
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
4866114 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
4866170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 55039937 - 55039881
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
55039937 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
55039881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 49879762 - 49879802
Alignment:
| Q |
134 |
acatattagaagtctgaaaaagcaatctgttcaggttagta |
174 |
Q |
| |
|
||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
49879762 |
acatattagtagtctgagaaaggaatctgttcaggttagta |
49879802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 253 - 556
Target Start/End: Original strand, 20604307 - 20604611
Alignment:
| Q |
253 |
tgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgcatt |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
20604307 |
tgttctacatgtattatgtctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgcatt |
20604406 |
T |
|
| Q |
353 |
aagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatg------ |
446 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
20604407 |
tagagaacattgtttgtcgatttgatcccatct----gaaagaagcgtctccatgggatatcaaatcaatatacta---tatgtgatgatgatgatcatg |
20604499 |
T |
|
| Q |
447 |
-atgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagaca |
544 |
Q |
| |
|
|||||||||| ||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20604500 |
catgtacatatcctaattaatatttagaggtggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagaca |
20604599 |
T |
|
| Q |
545 |
atggaatagaaa |
556 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20604600 |
atggcatagaaa |
20604611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 556
Target Start/End: Original strand, 29310805 - 29310880
Alignment:
| Q |
481 |
tttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa |
556 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
29310805 |
tttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttaaaagacaatggaatagaaa |
29310880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 35164380 - 35164463
Alignment:
| Q |
258 |
tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||||||| |||| | |||| ||| ||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
35164380 |
tacatgtataatgttttccatattcgaattatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
35164463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 30402705 - 30402649
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
30402705 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
30402649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 30409262 - 30409206
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
30409262 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
30409206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 251 - 556
Target Start/End: Complemental strand, 30848233 - 30847932
Alignment:
| Q |
251 |
tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgca |
350 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
30848233 |
tctgttctacatgtattatgtctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgca |
30848134 |
T |
|
| Q |
351 |
ttaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatg---acgatga |
447 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
30848133 |
attagagaacattgtttgccgatttgatcccatct----aaaagaagtgtctccacaggatatcaaatcaatatacta---tatgtgatgattatgatga |
30848041 |
T |
|
| Q |
448 |
tgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaat |
546 |
Q |
| |
|
||||||||| ||||| ||| || |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
30848040 |
tgtacatatcctaattaatttttggaggtggtcctttggaga-gcaaattttatagaaaattatgtttttgtttcaggtaaaactaatttagaagacaat |
30847942 |
T |
|
| Q |
547 |
ggaatagaaa |
556 |
Q |
| |
|
|||||||||| |
|
|
| T |
30847941 |
ggaatagaaa |
30847932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 11144349 - 11144405
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
11144349 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
11144405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 1660680 - 1660597
Alignment:
| Q |
258 |
tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||||||| |||| | |||| ||| ||||| | || ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
1660680 |
tacatgtataatgttttccatattcgaattattttaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
1660597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 1599762 - 1599698
Alignment:
| Q |
258 |
tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaa |
322 |
Q |
| |
|
||||||||| |||||| |||| ||| ||||| |||| ||||||||||| | ||||||||||||| |
|
|
| T |
1599762 |
tacatgtataatgtcttccatattcgaattatttcaaattgcaagtaatttaaattgagttttaa |
1599698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 355 - 497
Target Start/End: Original strand, 984 - 1123
Alignment:
| Q |
355 |
gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat |
454 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||| ||||| |||||||| || || ||||| |
|
|
| T |
984 |
gagaacaatgtttgccgatttgatcccatctgaaa----gaagtgtctctttgggatatgaaatcaatatacaactttttgtgatgatgactatatacat |
1079 |
T |
|
| Q |
455 |
at-ctaataaatattgggagatggtcctttggagatgctaattt |
497 |
Q |
| |
|
|| ||||| |||||| |||| |||||||||||||||||| |||| |
|
|
| T |
1080 |
atcctaattaatatttggaggtggtcctttggagatgcttattt |
1123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 497
Target Start/End: Complemental strand, 22140296 - 22140157
Alignment:
| Q |
355 |
gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat |
454 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||| |||||||| || || ||||| |
|
|
| T |
22140296 |
gagaacaatgtttgccgatttgatcccatc----cgaaagaagtgtctctttgggatatgaaatcaatatacaactttttgtgatgatgactatatacat |
22140201 |
T |
|
| Q |
455 |
at-ctaataaatattgggagatggtcctttggagatgctaattt |
497 |
Q |
| |
|
|| ||||| |||||| |||| |||||||||||||||||| |||| |
|
|
| T |
22140200 |
atcctaattaatatttggaggtggtcctttggagatgcttattt |
22140157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 355 - 497
Target Start/End: Original strand, 2452 - 2591
Alignment:
| Q |
355 |
gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat |
454 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||||| |||||||||| |||||||| |||||||||||| ||||| |||||||| || || ||||| |
|
|
| T |
2452 |
gagaacaatgttttccgatttgatcccatctgaaa----gaagtgtctcattgggatatgaaatcaatatacaactttttgtgatgatgactatatacat |
2547 |
T |
|
| Q |
455 |
at-ctaataaatattgggagatggtcctttggagatgctaattt |
497 |
Q |
| |
|
|| ||||| ||| || |||| |||||||||||||||||| |||| |
|
|
| T |
2548 |
atcctaattaatctttggaggtggtcctttggagatgcttattt |
2591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 6666936 - 6667074
Alignment:
| Q |
56 |
attgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgtt-ccttgattgaattgtt--------atcaaataactacacatattagaa |
144 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||| |||||||||| |||||||| || |
|
|
| T |
6666936 |
attggattcaaccaggaggggacagatgccgatcaagttaatgatgatgtttccttgattgatatgttcacacatgatcaaataaccgaacatattacaa |
6667035 |
T |
|
| Q |
145 |
gtctgaaaaagcaatctgttcaggttagtattccacctt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6667036 |
gtctgaaaaagcaatctgttcaggttagtacaccacctt |
6667074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 6781336 - 6781261
Alignment:
| Q |
31 |
tgatatagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgtt |
104 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
6781336 |
tgatatcgagcacaaacaagatggaattgaattcaaccaggaggggacagatgctgatcaagtaaatgatgctgtt |
6781261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 514
Target Start/End: Original strand, 31449287 - 31449326
Alignment:
| Q |
475 |
tggtcctttggagatgctaattttatagaaaattatgttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31449287 |
tggtcctttggagatgctaattttatagaaaattatgttt |
31449326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 13949966 - 13950022
Alignment:
| Q |
285 |
attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc |
341 |
Q |
| |
|
||||| |||| ||||||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
13949966 |
attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc |
13950022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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