View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14202_low_1 (Length: 414)

Name: NF14202_low_1
Description: NF14202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14202_low_1
NF14202_low_1
[»] scaffold0007 (2 HSPs)
scaffold0007 (21-409)||(73578-73966)
scaffold0007 (331-400)||(74029-74098)
[»] chr6 (10 HSPs)
chr6 (88-406)||(28489037-28489358)
chr6 (88-406)||(29801447-29801768)
chr6 (220-403)||(28475620-28475803)
chr6 (220-409)||(29691311-29691500)
chr6 (314-406)||(29721434-29721526)
chr6 (288-402)||(29672621-29672735)
chr6 (331-400)||(28488902-28488971)
chr6 (331-400)||(29801312-29801381)
chr6 (90-173)||(29757545-29757628)
chr6 (320-400)||(29705167-29705248)
[»] chr3 (1 HSPs)
chr3 (125-406)||(616339-616623)
[»] scaffold0012 (3 HSPs)
scaffold0012 (88-373)||(237197-237475)
scaffold0012 (341-404)||(210594-210657)
scaffold0012 (90-160)||(210697-210767)
[»] chr1 (2 HSPs)
chr1 (333-400)||(5919997-5920064)
chr1 (331-400)||(5919292-5919361)


Alignment Details
Target: scaffold0007 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 21 - 409
Target Start/End: Original strand, 73578 - 73966
Alignment:
Q  21 agtggaagggctttcgctctccagcaaatcaatatgagtggaagtggaggggctttctcataaatctattttcaattcaaaattgtatgaaactaattgt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73578 agtggaagggctttcgctctccagcaaatcaatatgagtggaagtggaggggctttctcataaatctattttcaattcaaaattgtatgaaactaattgt 73677  T
Q  121 gatggataaatcggttggttttctagataaacttaaaatcatgagaattataagatgcacaatcaagactgttccacctcttagtttggcttcactaaaa 220  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  73678 gatggataaatcggttggttttctaggtaaacttaaaatcatgagtattataagatgcacaatcaagactgttccacctcttagtttggcttcactagaa 73777  T
Q  221 gaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcgaagagcttaaaatctttagggttacaaactgcacca 320  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  73778 gaactcaatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgttggagagcttaaaatcttgagggttacaaactgcacca 73877  T
Q  321 aaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttcacctatg 409  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  73878 aaatcagaattattccatatctcatgttaccttctctagaagaacttgaactttcatattgtagtaatcttgagagtttttcacctatg 73966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 74029 - 74098
Alignment:
Q  331 tattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||||| |||||| |  |||||||||||||    
T  74029 tattccacctctcatgttagcttctctagaagaactcgatctttcaaattgtattggtcttgagagtttt 74098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 88 - 406
Target Start/End: Complemental strand, 28489358 - 28489037
Alignment:
Q  88 attttcaattcaaaattgtatgaaactaattgtgatggataaatcggttggttttctagataaacttaaaatcatgagaattataagatgcac---aatc 184  Q
    |||||||||||||||| ||  |||| ||||||  || ||||||||| |||||||| | | ||||||||||||| | ||||||||||| ||  |   ||||    
T  28489358 attttcaattcaaaatggtgagaaagtaattgcaattgataaatcgattggttttttgggtaaacttaaaatctttagaattataagttgtgccgaaatc 28489259  T
Q  185 aagactgttccacctcttagtttggcttcactaaaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcg 284  Q
      || |||||||||||| ||||||||||||||  ||||| | ||  ||||||||||||||   ||||| ||||||||||||||||||||| ||||| | |    
T  28489258 cggagtgttccacctctcagtttggcttcactggaagaaatagaattttcacattgttatagcctagaaagctttcctctcatggtgaatagatttcttg 28489159  T
Q  285 aagagcttaaaatctttagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtag 384  Q
       | ||||||||||| ||||||| ||| || |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||     
T  28489158 gtaaacttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtac 28489059  T
Q  385 taatcttgagagtttttcacct 406  Q
    |  ||||||||||||| |||||    
T  28489058 tggtcttgagagttttccacct 28489037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 88 - 406
Target Start/End: Complemental strand, 29801768 - 29801447
Alignment:
Q  88 attttcaattcaaaattgtatgaaactaattgtgatggataaatcggttggttttctagataaacttaaaatcatgagaattataagatgcac---aatc 184  Q
    |||||||||||||||| ||  |||| ||||||  || ||||||||| |||||||| | | ||||||||||||| | ||||||||||| ||  |   ||||    
T  29801768 attttcaattcaaaatggtgagaaagtaattgcaattgataaatcgattggttttttgggtaaacttaaaatctttagaattataagttgtgccgaaatc 29801669  T
Q  185 aagactgttccacctcttagtttggcttcactaaaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcg 284  Q
      || |||||||||||| ||||||||||||||  ||||| | ||  ||||||||||||||   ||||| ||||||||||||||||||||| ||||| | |    
T  29801668 cggagtgttccacctctcagtttggcttcactggaagaaatagaattttcacattgttatagcctagaaagctttcctctcatggtgaatagatttcttg 29801569  T
Q  285 aagagcttaaaatctttagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtag 384  Q
       | ||||||||||| ||||||| ||| || |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||     
T  29801568 gtaaacttaaaatcttaagggttataaattgtaccaaaatcaaaattattccatcactcattttaccttctctagaagaacttgatctttcagattgtac 29801469  T
Q  385 taatcttgagagtttttcacct 406  Q
    |  ||||||||||||| |||||    
T  29801468 tggtcttgagagttttccacct 29801447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 403
Target Start/End: Complemental strand, 28475803 - 28475620
Alignment:
Q  220 agaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcgaagagcttaaaatctttagggttacaaactgcacc 319  Q
    ||||||| |||||||||| ||| ||   ||||| || ||||||||| |||||| ||||||| | | ||| ||||||||||| ||||||| |   |||| |    
T  28475803 agaactcaatctttcacactgtcatagtctagaaagttttcctctcgtggtgagtggatttcttggagaacttaaaatcttgagggttataggttgcagc 28475704  T
Q  320 aaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttca 403  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||| | |||||| || |||||| |||||||||    
T  28475703 aaaatcagacttattcaatctctcgtgttaccttctctagaagaactcgatcttttagattgtactagtcttgacagtttttca 28475620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 220 - 409
Target Start/End: Complemental strand, 29691500 - 29691311
Alignment:
Q  220 agaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcgaagagcttaaaatctttagggttacaaactgcacc 319  Q
    ||||||| |||||||||| ||| ||   ||||| || ||||||| | |||||| ||||||| | | ||| ||||||||||| ||||||| |    ||| |    
T  29691500 agaactcaatctttcacactgtcatagtctagaaagttttcctcccgtggtgagtggatttcttggagaacttaaaatcttgagggttataggtagcagc 29691401  T
Q  320 aaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttcacctatg 409  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| | |||||| || |||||| |||||||||| ||||    
T  29691400 aaaatcagacttattccatctctcgtgttaccttctctagaagaactcgatcttttagattgtactagtcttgacagtttttcacatatg 29691311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 29721526 - 29721434
Alignment:
Q  314 tgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttcacct 406  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| | |||||||||||||||| ||||||||||    
T  29721526 tgcaccgaaatcagaattattccacctctcatgttaccttctctagaagaactctatctttcagagtgtagtaatcttgagaatttttcacct 29721434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 288 - 402
Target Start/End: Complemental strand, 29672735 - 29672621
Alignment:
Q  288 agcttaaaatctttagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaa 387  Q
    ||||||||||| | ||||||| ||  |||||| |||||   | | ||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||    
T  29672735 agcttaaaatcctgagggttataagttgcaccgaaatccacagtcttccatctctcatgttaccctctctagaaaaacttgatctttcatattgtattaa 29672636  T
Q  388 tcttgagagtttttc 402  Q
    |||||||||||||||    
T  29672635 tcttgagagtttttc 29672621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 28488971 - 28488902
Alignment:
Q  331 tattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||    
T  28488971 tattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagtttt 28488902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 29801381 - 29801312
Alignment:
Q  331 tattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||    
T  29801381 tattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagtttt 29801312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 29757628 - 29757545
Alignment:
Q  90 tttcaattcaaaattgtatgaaactaattgtgatggataaatcggttggttttctagataaacttaaaatcatgagaattataa 173  Q
    |||||||| ||||||||  |||||||||||  || |||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  29757628 tttcaattaaaaattgttggaaactaattgcaattgataaatcggttggttttctaggtaaacttaaaatcttgagacttataa 29757545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 400
Target Start/End: Complemental strand, 29705248 - 29705167
Alignment:
Q  320 aaaatcagaattattccatctctcatgttaccttctctagaag-aacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||  ||||||||  |||||| |  |||||||||||||    
T  29705248 aaaatcagaattattccatctctcatgttaccttctccaaaagaaaccagatctttcggattgtactggtcttgagagtttt 29705167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 125 - 406
Target Start/End: Original strand, 616339 - 616623
Alignment:
Q  125 gataaatcggttggttttctagataaacttaaaatcatgagaattataagatgcac---aatcaagactgttccacctcttagtttggcttcactaaaag 221  Q
    |||||||| ||||||||| |   ||||||||||||| ||||| |||||   |||||   |||| ||| |||||| ||||| | |||||||||| |  |||    
T  616339 gataaatcagttggttttttgcgtaaacttaaaatcttgagatttatagattgcaccaaaatccagagtgttccgcctctcaatttggcttcattggaag 616438  T
Q  222 aactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcgaagagcttaaaatctttagggttacaaactgcaccaa 321  Q
    |||| |||||||||| |||||||   ||||| || ||||||||| |||||||||||||| | | ||| ||||||||||| ||| ||| ||| ||||||||    
T  616439 aacttgatctttcacgttgttatagtctagaaagttttcctctcctggtgaatggattttttggagaacttaaaatcttaaggattataaaatgcaccaa 616538  T
Q  322 aatcagaattattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttcacct 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||    
T  616539 aatcaaaattattccatctctcatgttaccttctctagaagaactcgatctttcagattgtactaatcttgagaattttttacct 616623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 88 - 373
Target Start/End: Complemental strand, 237475 - 237197
Alignment:
Q  88 attttcaattcaaaattgtatgaaactaattgtgatggataaatcggttggttttctagataaacttaaaatcatgagaattataagatgcac---aatc 184  Q
    ||||||||||||||||||||   ||||||||   || |||||||||||||||| | |  | |||||||||||| ||||| ||||||| |||||   |||     
T  237475 attttcaattcaaaattgtaatcaactaattacaattgataaatcggttggttatttgcagaaacttaaaatcttgagatttataagttgcaccaaaata 237376  T
Q  185 aagactgttccacctcttagtttggcttcactaaaagaactcgatctttcacattgttatcaactagacagctttcctctcatggtgaatggatttgtcg 284  Q
      || |||||||||||| |||||||||||| |  ||||||||||  ||||| ||||||||   ||||| || |          ||||||||||||||| |    
T  237375 cggagtgttccacctctcagtttggcttcattggaagaactcgaattttcatattgttatagtctagaaaggt----------ggtgaatggatttgttg 237286  T
Q  285 aagagcttaaaatctttagggttacaaactgcaccaaaatcagaattattccatctctcatgttaccttctctagaagaacttgatctt 373  Q
     | | ||||||||||| ||||||| |   ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  237285 gaaaacttaaaatcttgagggttataggatgcaccaaaatcaaaattattccatctctcatattaccttctctagaagaactcgatctt 237197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 210657 - 210594
Alignment:
Q  341 ctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttttcac 404  Q
    ||||||||||||||||||||||||||||||||||||   ||||||| ||||||| |||||||||    
T  210657 ctcatgttaccttctctagaagaacttgatctttcaggatgtagtattcttgagggtttttcac 210594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 210767 - 210697
Alignment:
Q  90 tttcaattcaaaattgtatgaaactaattgtgatggataaatcggttggttttctagataaacttaaaatc 160  Q
    |||||||| ||||||||  | |||||||||  || |||||||||||||||||||||| |||||||||||||    
T  210767 tttcaattaaaaattgttgggaactaattgcaattgataaatcggttggttttctaggtaaacttaaaatc 210697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 5920064 - 5919997
Alignment:
Q  333 ttccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||| |||||| |||  ||||| |||||| |||||||||||||||||||  |||||| |||||||||    
T  5920064 ttccacctctcaagttggcttctttagaagtacttgatctttcatattgtgataatctcgagagtttt 5919997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 5919361 - 5919292
Alignment:
Q  331 tattccatctctcatgttaccttctctagaagaacttgatctttcatattgtagtaatcttgagagtttt 400  Q
    ||||||| |||||| |||  |||| |||||||  ||||||||||||||||||  ||| ||||||||||||    
T  5919361 tattccacctctcaagtttgcttcgctagaagttcttgatctttcatattgtgataaccttgagagtttt 5919292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University