View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14202_low_2 (Length: 248)
Name: NF14202_low_2
Description: NF14202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14202_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 16974576 - 16974797
Alignment:
| Q |
10 |
aaagggacgagaacaccaaacaatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaactttcactgtgcgttcgga |
109 |
Q |
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| T |
16974576 |
aaagggacgagaacaccaaacaatcatactgtcaatcaaatatcatatatcaactttcattcactacaatgccttctacaaatttcactgtgcgttcgga |
16974675 |
T |
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| Q |
110 |
gtctagttttagtttagcaagaaacaagctacagatcaaaggccttcagaatgcctcctacaacttgtcttgtggttgcgatgctgattccgctccacat |
209 |
Q |
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| T |
16974676 |
gtctggttttagtttagcaagagacaagctatacatcaaaggccttcagaatacctcctacaacttgtcttgtggttgcgatgctgattccgctccacat |
16974775 |
T |
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| Q |
210 |
caaattctcgagcctcacagag |
231 |
Q |
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| T |
16974776 |
caaattctcgagcctcagagag |
16974797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 16911182 - 16911221
Alignment:
| Q |
61 |
aactttcattcactacaatgccttctacaactttcactgt |
100 |
Q |
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| T |
16911182 |
aactttcattcactacaatgccttctacaactttcactgt |
16911221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 16916386 - 16916425
Alignment:
| Q |
61 |
aactttcattcactacaatgccttctacaactttcactgt |
100 |
Q |
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| T |
16916386 |
aactttcattcactacaatgccttctacaactttcactgt |
16916425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 16966228 - 16966277
Alignment:
| Q |
57 |
tatcaactttcattcactacaatgccttctacaactttcactgtgcgttc |
106 |
Q |
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| T |
16966228 |
tatcaactttcattcacaacaatgccttctataactttcaccatgcgttc |
16966277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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