View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14203_high_4 (Length: 426)
Name: NF14203_high_4
Description: NF14203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14203_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 14991779 - 14991865
Alignment:
| Q |
182 |
gaagaaagctgttttacaggtcatttgaaaatatcttattaagtgtaatattaaagtataaaaataaatacatgcatacaataaatt |
268 |
Q |
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| T |
14991779 |
gaagaaagctgttttacaggtcatttgaaaatatcttattaagtataatattaaattataaaaataaatacatgcatacaacaaatt |
14991865 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 14992076 - 14992145
Alignment:
| Q |
303 |
aatttaaattaggaaaattcgtaacgataaaagatgtgtttacgaaca-tatgtttgtgcaaatgaattt |
371 |
Q |
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| T |
14992076 |
aatttaaattacgaaaatttgtaacgatagaaggtgtgtttacgaacattatgttcgtgcaagtgaattt |
14992145 |
T |
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