View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14203_high_5 (Length: 345)
Name: NF14203_high_5
Description: NF14203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14203_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 279584 - 279913
Alignment:
| Q |
16 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------tt |
97 |
Q |
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| T |
279584 |
aagcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggttt |
279683 |
T |
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| Q |
98 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
279684 |
tatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatg |
279783 |
T |
|
| Q |
198 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279784 |
caagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttg |
279883 |
T |
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| Q |
298 |
ggataaatggtatgactaaaaagttctatg |
327 |
Q |
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| T |
279884 |
ggataaatggtatgactaaaaagttctatg |
279913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 327
Target Start/End: Original strand, 290148 - 290358
Alignment:
| Q |
117 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
216 |
Q |
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||||| || |||||| |||||||||||||||| |||||||||||| |||| | |||||| ||| || | |||||||| |||||||||| ||||||| |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
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| Q |
217 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
316 |
Q |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
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| Q |
317 |
aaagttctatg |
327 |
Q |
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||||||||||| |
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| T |
290348 |
aaagttctatg |
290358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 128 - 327
Target Start/End: Original strand, 24531886 - 24532085
Alignment:
| Q |
128 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
227 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
|
| Q |
228 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
327 |
Q |
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|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 128 - 325
Target Start/End: Original strand, 24525213 - 24525411
Alignment:
| Q |
128 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
226 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
|
| Q |
227 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttcta |
325 |
Q |
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|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttcta |
24525411 |
T |
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