View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14203_low_1 (Length: 1183)
Name: NF14203_low_1
Description: NF14203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14203_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 284 - 663
Target Start/End: Original strand, 29445207 - 29445584
Alignment:
| Q |
284 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
383 |
Q |
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| T |
29445207 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
29445306 |
T |
|
| Q |
384 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttatttatttatttacaaa |
483 |
Q |
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| T |
29445307 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttatttatttatttacaaa |
29445406 |
T |
|
| Q |
484 |
ggaaagcagcaaattttttaatcctttactttctgatagaattaattataaacagaatcgggttgagcatttattttcagcttttttactgaacttttat |
583 |
Q |
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| T |
29445407 |
ggaaagcagcaaattttttaatcctttactttctgatagaattaattataaatagaatcgggttgagcatttattttcagattttttactgaacttttat |
29445506 |
T |
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| Q |
584 |
ttccggtcaaaaggtttagacctctcaatgtttttaagttttaacccgacatcttttatttatttggtagataaatcaaa |
663 |
Q |
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| T |
29445507 |
ttccggtcaaaaggttcagacctctcaatgtttttaagttttaacccgacatc--ttgtttatttggtagataaatcaaa |
29445584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 29444915 - 29445189
Alignment:
| Q |
18 |
aaagaaagcaaccatcatgcgacatgtgacagagattcacttacatttaatggacagtgcaaccgatttcattgaggcaataggatgggaaaattatgtt |
117 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29444915 |
aaaggaagcaaccatcatgtgacatgtgacagagattcacttacatttaatggacagtgcaaccgatttcattgaggcaataggatgggaaaattatgtt |
29445014 |
T |
|
| Q |
118 |
gtgtttctactttatttattttcttatcaaagtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaaga |
217 |
Q |
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| T |
29445015 |
gtgtttctactttatttattttcttatcaaagtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaaga |
29445114 |
T |
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| Q |
218 |
tgctgagtgtcttaatcaggaatcaattcggttctttatgtgaatttgtgtagcatagtcattgtggatggctga |
292 |
Q |
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| T |
29445115 |
tgctgagtgtcttaatcaggaatcaattcggttctttatgtgaatttatgtagcatagtcattgtggatgactga |
29445189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 1006 - 1174
Target Start/End: Original strand, 29445828 - 29445996
Alignment:
| Q |
1006 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatgaaatggattccatcatc |
1105 |
Q |
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| T |
29445828 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatgaaatggattccatcatc |
29445927 |
T |
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| Q |
1106 |
tttttcatacgactcttttaaatccaaacattattatcttgtttaataccacttgatttcatctcactc |
1174 |
Q |
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| T |
29445928 |
tttttcatacgactcttttaaatccaaacaatattatcttgtttaataccacttgatttcatttcactc |
29445996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 752 - 910
Target Start/End: Original strand, 29445577 - 29445735
Alignment:
| Q |
752 |
aaatcaaacataagccatgcacaaagcagaaataggaaacacgcatgcgcacaaagaataattagccaaagaaacccacatgaattatctatcaatacaa |
851 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29445577 |
aaatcaaacataagccatgcacaaagcagaaataggaaacacgcatgcgcacaaagaataattagccaaagaaacccacatgaattatctatcaatacaa |
29445676 |
T |
|
| Q |
852 |
ccatatatacgcacgaagaaaaggcagcaaaataaatccaaaagaataggcacgcatgc |
910 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |
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| T |
29445677 |
tcatatatacgcacgaagaaaaggcagtaaaataaatccaaaagaatacgcatgcatgc |
29445735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 284 - 501
Target Start/End: Complemental strand, 29421424 - 29421217
Alignment:
| Q |
284 |
gatggctgattcatgctgaataacgcagcagaaagccagaaaccaaagtaagaagtctaatgcagtgttggtgtcctcaagaggtggttctgaagcaccc |
383 |
Q |
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||||||| |||||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
29421424 |
gatggctcattcatgctgaacaacgcagcagaaaactaaaaaccaaagaaagaagtctaatgcagtgttggtgtcctcaagaggtagttctaaagcac-- |
29421327 |
T |
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| Q |
384 |
agcagtgttgatattccacaattgactgtagttaggaaggaaaatcaattgagtggaagaaaatgtaagatgctaacaaatttattta-tttatttacaa |
482 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||| ||||||| |
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| T |
29421326 |
----------atattccacaattgactgtagttaggaaggaaaatcacttgagtggaagaaaatgtaagagacaaacaaatttatttattttgtttacaa |
29421237 |
T |
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| Q |
483 |
aggaaagc-agcaaattttt |
501 |
Q |
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|||||||| ||||||||||| |
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| T |
29421236 |
aggaaagctagcaaattttt |
29421217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 29421646 - 29421511
Alignment:
| Q |
149 |
gtgtttatactttctagagatatggaaaatgttcatttgtttatgaaaatttaatttgtgtaaagaagatgctgagtgtcttaatcaggaatcaattcgg |
248 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||| || |
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| T |
29421646 |
gtgtttctactttctagagatatggaaaatgtccatttgtttatgaaagtttaatttgtggaaagaaaatgcggagtgtcttaatcaggaatcaatttgg |
29421547 |
T |
|
| Q |
249 |
ttctttatgtgaatt--tgtgtagcatagtcattgt |
282 |
Q |
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||||||||||||||| ||| ||||||||||||||| |
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| T |
29421546 |
ttctttatgtgaattcgtgtatagcatagtcattgt |
29421511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1006 - 1088
Target Start/End: Complemental strand, 29421006 - 29420929
Alignment:
| Q |
1006 |
tatttaattaagatgtctcattccattgcatatctcctatcctaaattagaaggaatggaaactaatagaagaggatggaatg |
1088 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||| |
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| T |
29421006 |
tatttaattaagatatctcattctattgcatatct-----cctaaattagaaggaatggaaattaagggaagaagatggaatg |
29420929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 29421791 - 29421729
Alignment:
| Q |
23 |
aagcaaccatcatgcgacatgtgacagagattcacttacatttaatggacagtgcaaccgatt |
85 |
Q |
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|||||||||||||| || ||||||||||||||||||| ||||| ||||||| |||||| |||| |
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| T |
29421791 |
aagcaaccatcatgtgatatgtgacagagattcacttgcatttcatggacaatgcaactgatt |
29421729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 29421677 - 29421634
Alignment:
| Q |
87 |
cattgaggcaataggatgggaaaattatgttgtgtttctacttt |
130 |
Q |
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| T |
29421677 |
cattgaggcaataggatgggaaaattatgacgtgtttctacttt |
29421634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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