View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14203_low_3 (Length: 465)

Name: NF14203_low_3
Description: NF14203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14203_low_3
NF14203_low_3
[»] chr2 (1 HSPs)
chr2 (9-465)||(4223979-4224435)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Complemental strand, 4224435 - 4223979
Alignment:
Q  9 tccaagaatatcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattccaatattcatcatccacataaccaacta 108  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4224435 tccaacaaaatcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattccaatattcatcatccacataaccaacta 4224336  T
Q  109 accctctcttttctacaccccccaaaaaactaagtccataatcagatattttagcacaaaaattaacatcaataagaacattagaagatttaacacaacc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4224335 accctctcttttctacaccccccaaaaaactaagtccataatcagatattttagcacaaaaattaacatcaataagaacattagaagatttaacacaacc 4224236  T
Q  209 atgtacaatatttggtgctaccacttcatgaagatattgtagccctttagctactccagctgcaatcttaaacctcttgttccaatccaaaagtgaagaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4224235 atgtacaatatttggtgctaccacttcatgaagatattgtagccctttagctactccagctgcaatcttaaacctcttgttccaatccaaaagtgaagaa 4224136  T
Q  309 gaaccaccatcttgattctcatgcaagtaaaattccaaattcaccattcgaacaaactccatcaatataactctttcacctgataatgagagaatatgaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4224135 gaaccaccatcttgattctcatgcaagtaaaattccaaattcgccattcgaacaaactccatcaatataactctttcacctgataatgagagaatatgaa 4224036  T
Q  409 ttacatcaagggatacataagacttatatagtcgacgagaaccgagaagaacaacta 465  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4224035 ttacatcaagagatacataagacttatatagtcgacgagaaccgagaagaacaacta 4223979  T

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