View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14203_low_7 (Length: 270)

Name: NF14203_low_7
Description: NF14203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14203_low_7
NF14203_low_7
[»] scaffold1652 (3 HSPs)
scaffold1652 (1-238)||(4-241)
scaffold1652 (169-238)||(253-322)
scaffold1652 (174-236)||(336-398)
[»] scaffold0902 (2 HSPs)
scaffold0902 (44-262)||(3544-3762)
scaffold0902 (181-236)||(3477-3532)
[»] scaffold0002 (2 HSPs)
scaffold0002 (3-238)||(165039-165262)
scaffold0002 (169-236)||(165271-165338)
[»] chr6 (7 HSPs)
chr6 (3-177)||(14248513-14248687)
chr6 (99-238)||(14317026-14317165)
chr6 (1-76)||(14317161-14317236)
chr6 (155-238)||(14351653-14351736)
chr6 (169-236)||(14248388-14248455)
chr6 (181-238)||(14248464-14248521)
chr6 (174-236)||(14316950-14317012)
[»] scaffold1176 (2 HSPs)
scaffold1176 (1-101)||(1220-1320)
scaffold1176 (169-236)||(112-179)
[»] chr4 (4 HSPs)
chr4 (167-232)||(37245129-37245194)
chr4 (1-118)||(37245288-37245408)
chr4 (73-130)||(37237814-37237871)
chr4 (174-233)||(37241922-37241981)


Alignment Details
Target: scaffold1652 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4 - 241
Alignment:
Q  1 tggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactc 100  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  4 tggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactc 103  T
Q  101 accagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  104 accagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatcg 203  T
Q  201 tcaatctctactcctccatctcaagcaccatcgcctac 238  Q
    || |||||||||||||||||||||| ||||||||||||    
T  204 tcgatctctactcctccatctcaagtaccatcgcctac 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 253 - 322
Alignment:
Q  169 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctac 238  Q
    |||| |||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  253 ctcctgctgcttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctac 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 336 - 398
Alignment:
Q  174 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    ||||| |||||||||||  | |||||||| || ||||||||||||||||||||||||| ||||    
T  336 gctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcct 398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 3762 - 3544
Alignment:
Q  44 atcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaatagtgctccctct 143  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3762 atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctct 3663  T
Q  144 tcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctaccatat 243  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||  |||||| ||||||||||||||||||| || |    
T  3662 tcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaattt 3563  T
Q  244 ttactccctatgctactcc 262  Q
    ||||||||| |||| ||||    
T  3562 ttactccctctgctgctcc 3544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 3532 - 3477
Alignment:
Q  181 ctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    ||||||||||  | |||||||| ||||||||||||||||||||||||||| |||||    
T  3532 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcct 3477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 165039 - 165262
Alignment:
Q  3 gttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcac 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  165039 gttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcac 165138  T
Q  103 cagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtc 202  Q
    ||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||||  |||||||||||            ||||||||| ||||| |     
T  165139 cagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgctttctctggttctcc------------tgctgtcgctccatcctg 165226  T
Q  203 aatctctactcctccatctcaagcaccatcgcctac 238  Q
     |||||||| ||||||||||||| ||||||||||||    
T  165227 gatctctacccctccatctcaaggaccatcgcctac 165262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 165271 - 165338
Alignment:
Q  169 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    |||| |||||||||||||||||  | |||| ||| |||||||||||||||||||||| ||||||||||    
T  165271 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcct 165338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 14248687 - 14248513
Alignment:
Q  3 gttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactcac 102  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248687 gttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcac 14248588  T
Q  103 cagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctg 177  Q
    ||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||||  ||||||||||| ||||    
T  14248587 cagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgctttctctggttctcctgctg 14248513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 14317165 - 14317026
Alignment:
Q  99 tcaccagtggcgtctcctccggtagctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctgtcgccccat 198  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |||||| ||||    
T  14317165 tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat 14317066  T
Q  199 cgtcaatctctactcctccatctcaagcaccatcgcctac 238  Q
    | |  |||||||| || |||||||||| ||||||||||||    
T  14317065 catggatctctaccccaccatctcaaggaccatcgcctac 14317026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14317236 - 14317161
Alignment:
Q  1 tggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacc 76  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  14317236 tggttgcactgtttctgagttccgctgttgctcgatcaccaccatcatcacccaagtcttctccgtttccatcacc 14317161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 14351736 - 14351653
Alignment:
Q  155 tgcttcatctggttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctac 238  Q
    |||||| | ||||||||||||||  |||||||||||  | ||||| ||| |||||||||| |||||||||||||||||||||||    
T  14351736 tgcttcctttggttctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctac 14351653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 14248455 - 14248388
Alignment:
Q  169 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    |||| |||||||||||||||||  | |||| ||| |||||||||||||||||||||| ||||||||||    
T  14248455 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcct 14248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 14248521 - 14248464
Alignment:
Q  181 ctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcctac 238  Q
    ||||||||||||| ||||| |  |||||||| ||||||||||||| ||||||||||||    
T  14248521 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctac 14248464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 14317012 - 14316950
Alignment:
Q  174 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    ||||||||||||| |||  | ||||| || |||||||||||||| ||||||||||| ||||||    
T  14317012 gctgctgctcctgatgtgactccatcatcgatctctactcctccgtctcaagcaccctcgcct 14316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1220 - 1320
Alignment:
Q  1 tggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcccctaagtcttctccgtttccatcacctgctatttctccctccgctgactc 100  Q
    |||||||||||||||| |||| | | ||||||  ||||||  || ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| ||||    
T  1220 tggttgcactgtttctaagtttcaccgttgcttaatcaccatcaacatcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactc 1319  T
Q  101 a 101  Q
    |    
T  1320 a 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 112 - 179
Alignment:
Q  169 ctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcgcct 236  Q
    |||| |||||||||||||||||  | ||||| || |||||||||||||||||||||||||||||||||    
T  112 ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcct 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 37245194 - 37245129
Alignment:
Q  167 ttctcccgctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatc 232  Q
    |||||||| ||| |||||||||||  | |||||||| |||||||||||||||||||||||||||||    
T  37245194 ttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 37245408 - 37245288
Alignment:
Q  1 tggttgcactgtttctgagttccgctgttgctcgatcaccgccatcatcc---cctaagtcttctccgtttccatcacctgctatttctccctccgctga 97  Q
    ||||||||||| | |||  |||| | |||||||||||||| ||||||||    || | || ||||||||||||||||||    ||||||||||||||| |    
T  37245408 tggttgcactgctgctggattccacagttgctcgatcaccaccatcatcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaa 37245309  T
Q  98 ctcaccagtggcgtctcctcc 118  Q
    |||||||||||| ||| ||||    
T  37245308 ctcaccagtggcatctgctcc 37245288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
Q  73 cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtagctgtgaa 130  Q
    ||||||| || |||||||||||||||||||| ||||| |||||||| ||| |||||||    
T  37237871 cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa 37237814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 37241981 - 37241922
Alignment:
Q  174 gctgctgctcctgctgtcgccccatcgtcaatctctactcctccatctcaagcaccatcg 233  Q
    ||||| ||||||||| |  | |||||||||||||||||||||||| || |||||||||||    
T  37241981 gctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcg 37241922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University