View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14204_high_2 (Length: 478)

Name: NF14204_high_2
Description: NF14204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14204_high_2
NF14204_high_2
[»] chr1 (4 HSPs)
chr1 (138-463)||(17302286-17302609)
chr1 (6-142)||(17302649-17302785)
chr1 (295-447)||(15504202-15504354)
chr1 (295-442)||(2260079-2260226)
[»] chr4 (6 HSPs)
chr4 (295-447)||(11345996-11346148)
chr4 (297-441)||(47491998-47492142)
chr4 (310-441)||(51305258-51305388)
chr4 (298-442)||(34113279-34113423)
chr4 (334-419)||(43901842-43901926)
chr4 (147-175)||(13807592-13807620)
[»] chr7 (2 HSPs)
chr7 (362-449)||(44701546-44701633)
chr7 (355-441)||(19562115-19562202)
[»] chr6 (1 HSPs)
chr6 (299-440)||(6725944-6726085)
[»] chr5 (2 HSPs)
chr5 (295-442)||(11429783-11429933)
chr5 (390-448)||(3003711-3003769)
[»] chr8 (1 HSPs)
chr8 (355-449)||(10517595-10517689)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 138 - 463
Target Start/End: Complemental strand, 17302609 - 17302286
Alignment:
Q  138 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaaactatttctag 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17302609 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaa-ctatttctag 17302511  T
Q  238 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagtggtggtttatgtagaatcacgg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  17302510 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagcggtggtttctgtagaatcacag 17302411  T
Q  338 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17302410 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcaagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 17302311  T
Q  438 aacacgtactaaagaaatgtgacatt 463  Q
    |||||||||| |||||||||||||||    
T  17302310 aacacgtact-aagaaatgtgacatt 17302286  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 17302785 - 17302649
Alignment:
Q  6 tttctatattagtgattttaatagtaattatgattgacgtaagtagttttagtttttaatgatatgtcaattcggggtatatattgattaatttttagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17302785 tttctatattagtgattttaatagtaattatgattgacgtaagtagttttagtttttaatgatatgtcaattcggggtatatattgattaattttgagtt 17302686  T
Q  106 tattaggcatgcactgacagtgtaaactagttataca 142  Q
    |||||||||||||||||||||||||||||||||||||    
T  17302685 tattaggcatgcactgacagtgtaaactagttataca 17302649  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 295 - 447
Target Start/End: Complemental strand, 15504354 - 15504202
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||||||||    
T  15504354 ttagtgctcgtttggtttagcggtggttactagaaaatcacggtggattttcacgttttcacaaaagcttacttttgtagcttcaggatttccacgtcca 15504255  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 447  Q
    |||| || ||  | |||||||||||| || |||||||||||||||||| ||||    
T  15504254 gcttacctcgaaacgtgatatttgcactgtaaaagctaatccaaacacatact 15504202  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 2260079 - 2260226
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||||| ||||||||||  |||||||| |  ||||| |||||| ||||| | |||| || ||||| ||| ||||||||||| |  |||| ||||||||    
T  2260079 ttagtgctggtttggtttatcggtggtttctagagaattacggtggatttttatgttttcataaaagtttgtttttgtagcttcaagattttcacgtcca 2260178  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
     ||| || ||| | ||||| ||||| |||||||||||||  |||||||    
T  2260179 acttacctcggaacgtgatctttgcgttgcaaaagctaactcaaacac 2260226  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 447
Target Start/End: Original strand, 11345996 - 11346148
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||| ||||||||||| | |||||||| | || ||||||||| | ||| || ||||  |||||| |||||||||||||||| || |||| |||||| |    
T  11345996 ttagtgttcgtttggtttggcggtggtttttataaaatcacggtaagtttccatgtttctacaaaaccttgcttttgtagcttcaggattttcacgtcta 11346095  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 447  Q
    ||||||| ||| |  |||||||||  |||||||||||||||||||||| ||||    
T  11346096 gcttgcctcggaacatgatatttgtcttgcaaaagctaatccaaacacatact 11346148  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 47492142 - 47491998
Alignment:
Q  297 agtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagc 396  Q
    |||||| ||||||||||  |||||||| |  ||||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || ||||||| |||||||    
T  47492142 agtgcttgtttggtttaacggtggtttttaaagaattacggtggattttcacgttttcacaaaatcttacttttgtaacttcaggatttccatgtccagc 47492043  T
Q  397 ttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 441  Q
    ||||| |  || |||||||||||  |||||||| |||||||||||    
T  47492042 ttgcctctagacgtgatatttgccctgcaaaagttaatccaaaca 47491998  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 441
Target Start/End: Original strand, 51305258 - 51305388
Alignment:
Q  310 tttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatg 409  Q
    ||||| |||||||| |  |||||||||||||||||||| |||| ||||||| |||| |||| ||| || ||||||| ||| |||| |||||| ||||| |    
T  51305258 tttagcggtggttttttaagaatcacggtgaattttcatgttttcacaaaaacttgttttt-tagtttgagaattttcacatccaacttgcctcgggacg 51305356  T
Q  410 tgatatttgcattgcaaaagctaatccaaaca 441  Q
    |||||||| || ||||||||||||||||||||    
T  51305357 tgatattttcactgcaaaagctaatccaaaca 51305388  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 442
Target Start/End: Complemental strand, 34113423 - 34113279
Alignment:
Q  298 gtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagct 397  Q
    |||||||||||||||||   |||||| |  |||||||||||| |||||||||||| |||||||| || |||||||| ||| |  ||||| || ||||| |    
T  34113423 gtgctcgtttggtttagcaatggtttctagagaatcacggtggattttcacgttttcacaaaagtttacttttgtaccttcaagatttctacatccagtt 34113324  T
Q  398 tgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
    |  | ||||| |||||||| ||| ||||||||||||| |||||||    
T  34113323 tatctcgggacgtgatattcgcaatgcaaaagctaattcaaacac 34113279  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 43901926 - 43901842
Alignment:
Q  334 acggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgc 419  Q
    |||||| |||||||||||| ||||||||||||| |||||||||| || |||||||| |||| |||| |  |||| |||||||||||    
T  43901926 acggtggattttcacgttttcacaaaagcttgc-tttgtagcttcaggatttccacatccaacttgacttgggacgtgatatttgc 43901842  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 13807620 - 13807592
Alignment:
Q  147 cttattggatgtcgatgtaaaactatttt 175  Q
    |||||||||||||||||||||||||||||    
T  13807620 cttattggatgtcgatgtaaaactatttt 13807592  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 44701546 - 44701633
Alignment:
Q  362 cttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 449  Q
    ||||||||||||  ||||| |||||||||||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||||||    
T  44701546 cttgcttttgtacttttaggatttccacgtccagcttaactcgggacgtgatatttacactgcaaaagctaatccaaacacgtactaa 44701633  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 441
Target Start/End: Original strand, 19562115 - 19562202
Alignment:
Q  355 acaaaagcttgctttt-gtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 441  Q
    |||||||||| ||||| |||||||||| |||| || ||| | |||| | |||||  ||||||||||  ||||||||||||||||||||    
T  19562115 acaaaagcttactttttgtagctttaggattttcaggtctaacttgtctcgggacatgatatttgccatgcaaaagctaatccaaaca 19562202  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 6725944 - 6726085
Alignment:
Q  299 tgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagctt 398  Q
    |||| ||||| ||||| |||||||| | |||||||| |||| |||||||||||| ||||||| ||||| ||| || ||  || ||||||| ||||  |||    
T  6725944 tgctggtttgatttagcggtggtttctatagaatcatggtggattttcacgttttcacaaaaacttgcgtttataactccaggatttccaagtcctactt 6726043  T
Q  399 gccccgggatgtgatatttgcattgcaaaagctaatccaaac 440  Q
    ||| |||||||||| |||| |  |||||||||||||||||||    
T  6726044 gcctcgggatgtgagatttacggtgcaaaagctaatccaaac 6726085  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 442
Target Start/End: Complemental strand, 11429933 - 11429783
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgc----ttttgtagctttagaatttccacg 390  Q
    |||||||| ||||||||||||||||| || |  ||||||| | |  |||||||||||| ||||||| |||||    ||||||| ||| || ||| |||||    
T  11429933 ttagtgcttgtttggtttagtggtggattctagagaatcatgatagattttcacgttttcacaaaaacttgcgaacttttgtaacttcaggatt-ccacg 11429835  T
Q  391 tccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
    |||| |||||| ||||| ||||||||| ||  |||||||||| |||||||||    
T  11429834 tccaacttgcctcgggacgtgatatttacaccgcaaaagctattccaaacac 11429783  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 3003711 - 3003769
Alignment:
Q  390 gtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtacta 448  Q
    |||||||||||| ||||| |||| |||| || ||||||||||||||||||||| |||||    
T  3003711 gtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacatacta 3003769  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 10517689 - 10517595
Alignment:
Q  355 acaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 449  Q
    ||||||| || |||||||||||| |  ||||  || || ||||| || | ||||||||||||||| |||| |||| |||||||||||| ||||||    
T  10517689 acaaaagtttacttttgtagcttcaagatttttacatctagcttacctcaggatgtgatatttgccttgcgaaagttaatccaaacacatactaa 10517595  T

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