View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14204_high_3 (Length: 353)
Name: NF14204_high_3
Description: NF14204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14204_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 44576287 - 44575938
Alignment:
| Q |
1 |
agctaattcactcatttcatatcaatcattatatatgtgatagactttactaacctttcaaccgatcgaattaacttgatgttaactcaacattttga-t |
99 |
Q |
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| T |
44576287 |
agctaattcactcatttcatatcaatcattatatatgtgatagactttactaacctttcaaccgatcgaa----cttgatgttaactcaacattttgaat |
44576192 |
T |
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| Q |
100 |
gttagatgtcagagttattcaataggaagagttcaatacctgggaaaattccaagtggatattttaatacagtatttgggtttgatgagggttcatgggc |
199 |
Q |
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| T |
44576191 |
gttagatgtcagagttattcaataggaagagttcgatacctgggaaaattccaagtggatatttcaatacagtatttgggtttgatgagggttcatgggc |
44576092 |
T |
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| Q |
200 |
agctgaagcagctaacacaaaatgtttaggtgttgatggatatttgataaaactattcaatcttcatattgatccatatccacttcttctttctaaacaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44576091 |
agctgaagcagctaacacaaaatgtttaggtgttgatggatatttgataaaactattcaatcttcatattgatccatatccacttcttctttctaaacaa |
44575992 |
T |
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| Q |
300 |
gtcattcaagctgttccttcttcatgggatcctcctgcacttgcaaggtacaca |
353 |
Q |
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| T |
44575991 |
gtcattcaagctgttccttcttcatgggatcctcctgcacttgcaaggtacaca |
44575938 |
T |
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