View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14204_low_1 (Length: 864)

Name: NF14204_low_1
Description: NF14204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14204_low_1
NF14204_low_1
[»] chr1 (13 HSPs)
chr1 (633-848)||(31373487-31373702)
chr1 (638-848)||(31374194-31374401)
chr1 (494-563)||(7338798-7338867)
chr1 (495-563)||(2367543-2367611)
chr1 (494-565)||(1764514-1764585)
chr1 (494-560)||(7338012-7338078)
chr1 (494-563)||(49385085-49385154)
chr1 (519-558)||(49618303-49618342)
chr1 (519-563)||(10469647-10469691)
chr1 (564-596)||(31373419-31373451)
chr1 (494-564)||(27891286-27891356)
chr1 (494-563)||(27890568-27890637)
chr1 (494-563)||(49385782-49385851)
[»] chr3 (21 HSPs)
chr3 (160-329)||(52420602-52420771)
chr3 (47-140)||(45508924-45509017)
chr3 (494-562)||(35903690-35903758)
chr3 (499-558)||(40810290-40810349)
chr3 (494-565)||(8923626-8923697)
chr3 (494-557)||(40809585-40809648)
chr3 (494-564)||(41325821-41325891)
chr3 (494-563)||(8922884-8922953)
chr3 (519-563)||(44312393-44312437)
chr3 (494-564)||(52103607-52103677)
chr3 (494-563)||(23514485-23514554)
chr3 (494-563)||(41326539-41326608)
chr3 (494-563)||(50107568-50107637)
chr3 (494-560)||(1772870-1772936)
chr3 (494-562)||(29642400-29642468)
chr3 (519-563)||(29643301-29643345)
chr3 (495-563)||(34329128-34329196)
chr3 (519-562)||(52102552-52102595)
chr3 (499-565)||(3799830-3799895)
chr3 (494-564)||(34330117-34330187)
chr3 (494-563)||(37886654-37886723)
[»] chr2 (14 HSPs)
chr2 (494-564)||(35029861-35029931)
chr2 (494-564)||(34229074-34229144)
chr2 (494-550)||(1233713-1233769)
chr2 (494-565)||(34228145-34228216)
chr2 (47-140)||(19845385-19845485)
chr2 (394-447)||(1233816-1233869)
chr2 (519-563)||(6205448-6205492)
chr2 (494-563)||(39062899-39062968)
chr2 (527-563)||(39063805-39063841)
chr2 (494-557)||(39062225-39062288)
chr2 (494-564)||(41282955-41283025)
chr2 (519-565)||(42148678-42148724)
chr2 (494-535)||(29762259-29762300)
chr2 (390-439)||(41282851-41282900)
[»] chr6 (7 HSPs)
chr6 (495-563)||(34260116-34260184)
chr6 (495-563)||(34262186-34262254)
chr6 (495-563)||(6829989-6830057)
chr6 (495-563)||(6826558-6826626)
chr6 (494-563)||(10840011-10840080)
chr6 (498-563)||(18066292-18066356)
chr6 (495-563)||(3295797-3295865)
[»] chr8 (19 HSPs)
chr8 (494-563)||(42578709-42578778)
chr8 (494-563)||(6462615-6462684)
chr8 (498-563)||(7870376-7870441)
chr8 (501-558)||(8814483-8814540)
chr8 (494-563)||(11519350-11519419)
chr8 (494-563)||(42503921-42503990)
chr8 (496-560)||(42503029-42503093)
chr8 (496-563)||(38443695-38443762)
chr8 (495-562)||(11520091-11520158)
chr8 (495-554)||(17943014-17943073)
chr8 (494-556)||(38444464-38444526)
chr8 (494-563)||(38443034-38443103)
chr8 (502-564)||(12203350-12203412)
chr8 (502-564)||(12447778-12447840)
chr8 (494-563)||(17938175-17938244)
chr8 (519-563)||(38443623-38443667)
chr8 (494-565)||(6461878-6461949)
chr8 (501-563)||(17923866-17923928)
chr8 (526-563)||(34587364-34587401)
[»] chr4 (13 HSPs)
chr4 (494-563)||(39311371-39311440)
chr4 (494-564)||(32159521-32159591)
chr4 (494-563)||(39310396-39310465)
chr4 (494-563)||(44516785-44516854)
chr4 (494-562)||(24484784-24484852)
chr4 (495-563)||(36386035-36386103)
chr4 (496-558)||(32158804-32158866)
chr4 (494-563)||(5469963-5470032)
chr4 (495-563)||(36385818-36385886)
chr4 (527-564)||(31414880-31414917)
chr4 (494-558)||(21857537-21857601)
chr4 (494-558)||(21913400-21913464)
chr4 (525-565)||(45621897-45621937)
[»] scaffold0402 (1 HSPs)
scaffold0402 (495-563)||(10856-10924)
[»] chr7 (10 HSPs)
chr7 (495-565)||(5956437-5956507)
chr7 (495-563)||(5960993-5961061)
chr7 (495-563)||(43844794-43844862)
chr7 (495-558)||(4126698-4126761)
chr7 (496-558)||(10270865-10270927)
chr7 (498-556)||(43845891-43845949)
chr7 (494-535)||(39020961-39021002)
chr7 (494-563)||(35753064-35753137)
chr7 (494-563)||(35752326-35752394)
chr7 (494-563)||(48204147-48204216)
[»] chr5 (4 HSPs)
chr5 (498-563)||(120073-120138)
chr5 (496-558)||(2639717-2639779)
chr5 (501-559)||(126265-126322)
chr5 (494-563)||(31600448-31600517)
[»] scaffold0178 (1 HSPs)
scaffold0178 (494-565)||(18479-18550)
[»] scaffold0330 (1 HSPs)
scaffold0330 (494-559)||(13241-13306)
[»] scaffold0098 (1 HSPs)
scaffold0098 (495-564)||(52263-52332)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 633 - 848
Target Start/End: Original strand, 31373487 - 31373702
Alignment:
Q  633 caatattggaacaattagaagtttttaaaataaaaacttgtacaaattgaaattaccttccacgtctcaactatttcacaattctctcatttaacttctt 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31373487 caatattggaacaattagaagtttttaaaataaaaacttgtacaaattgaaattaccttccacgtctcaactatttcacaattctctcatttaacttctt 31373586  T
Q  733 catgaacaactataagtacataaaaatttctccaaacatgaagaactataaagttgttttatctgaacaagggctttggggttcaattccagaaactaat 832  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31373587 catgaacaactataagtacataaaaatttctccaaacatgaagaactataaagttgttttatctgaacaagggctttggggttcaattccagaaactaat 31373686  T
Q  833 cctctatggataagtt 848  Q
    | ||||||||||||||    
T  31373687 cttctatggataagtt 31373702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 638 - 848
Target Start/End: Original strand, 31374194 - 31374401
Alignment:
Q  638 ttggaacaattagaagtttttaaaataaaaacttgtac-aaattgaaattaccttccacgtctcaactatttcacaattctctcatttaacttcttcatg 736  Q
    |||||| ||||| |||||||| |||||||||||| ||| |||||||||||| ||||  | ||| ||||||||||||||||| ||||||||||||   |||    
T  31374194 ttggaataattataagttttttaaataaaaacttatacgaaattgaaattagcttcagcatcttaactatttcacaattctatcatttaacttc---atg 31374290  T
Q  737 aacaactataagtacataaaaatttctccaaacatgaagaactataaagttgttttatctgaacaagggctttggggttcaattccagaaactaatcctc 836  Q
    |||||||| |||| ||||| ||||||| ||||||| |||||||| |||  || || |||||||||  |||||| ||| |||| ||||||||||||||||     
T  31374291 aacaactacaagttcataagaatttctgcaaacataaagaactaaaaatctgctt-atctgaacagaggctttagggctcaactccagaaactaatcctt 31374389  T
Q  837 tatggataagtt 848  Q
    ||||||||||||    
T  31374390 tatggataagtt 31374401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 7338798 - 7338867
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||| ||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||    
T  7338798 ccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggactc 7338867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 2367543 - 2367611
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||| ||||    
T  2367543 cacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 2367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 1764585 - 1764514
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||| ||||||||||    |||| |||||||||||| |||| ||||||||||||||||||||||||    
T  1764585 ccacatgtcatacatccatgatgataaatagggtaaattgagcaaacttaaatggagcaaagatggactcct 1764514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 560
Target Start/End: Complemental strand, 7338078 - 7338012
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatgga 560  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||| |||  |||||||||||||||||||    
T  7338078 ccacatgtcacatatctatgacttgaaatgggataaattgagaaaatataaatggagcaaagatgga 7338012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 49385154 - 49385085
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||||| |  |||||||||||||   | |||| ||||||||||||||||||||||    
T  49385154 ccacatgtcacacatccatgattgtaaatggggtaaatgatgcaaacttaaatggagcaaagatggactc 49385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 519 - 558
Target Start/End: Complemental strand, 49618342 - 49618303
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  49618342 aaatggggtaaattgaggaagcctaaatggagcaaagatg 49618303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 10469647 - 10469691
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||    
T  10469647 aaatggagtaaattgaggaaacataaattgagcaaagatggactc 10469691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 596
Target Start/End: Original strand, 31373419 - 31373451
Alignment:
Q  564 ctgccaatagggttgactctttgtcaagttttt 596  Q
    |||||||||||||||||||||||||||||||||    
T  31373419 ctgccaatagggttgactctttgtcaagttttt 31373451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 27891286 - 27891356
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||| |||||||||     ||||||| ||||||||| |||  |||||||||||||||||||||||    
T  27891286 ccacatgtcagacatccatgttggtaaatgggataaattgagtaaagataaatggagcaaagatggactcc 27891356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 27890637 - 27890568
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    |||| || ||||||||| |||   |||||||||||||||||||||    
T  27890637 ccacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatggactc 27890568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 49385782 - 49385851
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||| ||||||||    ||||||||||||| | | || ||||||| ||||||||||||||||    
T  49385782 ccacatgtcacatatccatgatggtaaatggggtaaatggtgcaatcctaaattgagcaaagatggactc 49385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 3e-69; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 160 - 329
Target Start/End: Complemental strand, 52420771 - 52420602
Alignment:
Q  160 aaataattggccttgttcatcatctccacaagccccaataattccactggaaattccaaaatcgctactaaaaccaagaattgaattagcaacactgcca 259  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||| ||||||||||||||||    
T  52420771 aaataattgaccttgttcatcatcaccacaagccccaataattccactggaaattccaaaaccactactaagaccacgaattgtattagcaacactgcca 52420672  T
Q  260 ccagccagagttttcatgatagaagaatcagctgaattagatttggatttaacttccttcagtatatttt 329  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52420671 ccagccagagttttcatgacagaagaatcagccgaattagatttggatttaacttccttcagtatatttt 52420602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 45509017 - 45508924
Alignment:
Q  47 ctgatatgatttttcccaattctctctgttatagatctaaaatgcatatggctaagggccaaggcaaagtcaataatgcaaatgcaagagatga 140  Q
    |||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45509017 ctgatatgatttttcccaattccctcagtcatagatctaaaatgcgtatggctaagggctaaggcaaagtcaataatgcaaatgcaagagatga 45508924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 35903758 - 35903690
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggact 562  Q
    ||||||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||| ||||    
T  35903758 ccacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggagcaaagatagact 35903690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 499 - 558
Target Start/End: Original strand, 40810290 - 40810349
Alignment:
Q  499 tgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  40810290 tgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 494 - 565
Target Start/End: Original strand, 8923626 - 8923697
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||||||||||||||    ||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  8923626 ccacatgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactcct 8923697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 494 - 557
Target Start/End: Complemental strand, 40809648 - 40809585
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagat 557  Q
    |||| ||||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||||    
T  40809648 ccacgtgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggagcaaagat 40809585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 494 - 564
Target Start/End: Complemental strand, 41325891 - 41325821
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||||||||||    ||||||||||||||||| |||||||||||||| ||||||| |||||    
T  41325891 ccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactcc 41325821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 8922953 - 8922884
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  8922953 ccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 8922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 44312393 - 44312437
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  44312393 aaatggggtaaattgaggaaacataaatggagcaaagatggactc 44312437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 564
Target Start/End: Complemental strand, 52103677 - 52103607
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||| ||||||||||||||    ||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  52103677 ccacatatcacacatccatgatagtaaatggggtaaatggagcaaacctaaatgaagcaaagatggactcc 52103607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 23514485 - 23514554
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    ||||||||||||||||| |||   |||||||||||||||||||||    
T  23514485 ccacatgtcacacatccatgatagtaaatggggtaaattgagcaaaggcaaatggagcaaagatggactc 23514554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 41326539 - 41326608
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    |||| |||||||| ||| ||||| |||||||||||||||||||||    
T  41326539 ccacatgtcacacatccatgatggtaaattgggtaaatggagcaaacccaaatggagcaaagatggactc 41326608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 50107637 - 50107568
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    ||||||||||||||||| ||||||||||| || ||||||| ||||    
T  50107637 ccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatgtagtaaagatgaactc 50107568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 560
Target Start/End: Complemental strand, 1772936 - 1772870
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatgga 560  Q
    |||||||||||| ||||||||    ||||||||||||||||| |||| ||||||||||||| |||||    
T  1772936 ccacatgtcacatatccatgatagtaaatggggtaaattgagcaaacttaaatggagcaaatatgga 1772870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 29642468 - 29642400
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggact 562  Q
    ||||||||||||||||  |||  | ||||||| |||||||||||| | ||||||||||||| |||||||    
T  29642468 ccacatgtcacacatctttgatatgaaatgggataaattgaggaagcttaaatggagcaaaaatggact 29642400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 29643301 - 29643345
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||    
T  29643301 aaattgggtaaattgaggaagcctaaatggagcaacgatggactc 29643345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 34329128 - 34329196
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||||    |||||| |||||||||| |||  |||||| |||||||||||||||    
T  34329128 cacatgtcacacatccatgatagtaaatggagtaaattgagcaaaaataaatgaagcaaagatggactc 34329196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 562
Target Start/End: Complemental strand, 52102595 - 52102552
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggact 562  Q
    |||||| ||||||||||||||| ||||| |||||||||||||||    
T  52102595 aaatggagtaaattgaggaaacataaattgagcaaagatggact 52102552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 565
Target Start/End: Complemental strand, 3799895 - 3799830
Alignment:
Q  499 tgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    ||||||||||| |||  || ||||||| ||||||||| || | ||||||||||||||||||||||||    
T  3799895 tgtcacacatctatgcattaaaatgggataaattgagcaagc-taaatggagcaaagatggactcct 3799830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 34330117 - 34330187
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||| ||||| ||| |||  |||||| | ||||||| | |||||||||||||||||||| |||||    
T  34330117 ccacatgtcatacatctatgccttggaatgggatcaattgagcacacctaaatggagcaaagatgaactcc 34330187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 37886723 - 37886654
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||| || |  | ||| ||  ||||||||||||||||||||| |||||| ||||||||    
T  37886723 ccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatgaagcaaaaatggactc 37886654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 35029861 - 35029931
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  35029861 ccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagatagactcc 35029931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 34229074 - 34229144
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  34229074 ccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggactcc 34229144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 1233769 - 1233713
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggag 550  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1233769 ccacgtgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggag 1233713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 34228216 - 34228145
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||||||||| || |||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  34228216 ccacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggagcaaagatggactcct 34228145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 19845385 - 19845485
Alignment:
Q  47 ctgatatgatttttcccaattctctctgttatagatctaaaatgcatatggctaagggccaagg-------caaagtcaataatgcaaatgcaagagatg 139  Q
    |||||||||||||| ||||||| ||| || ||||||||||||||| ||||||||||||| ||||       |||||||||||||||||||||||||||||    
T  19845385 ctgatatgatttttaccaattccctcagtcatagatctaaaatgcgtatggctaagggctaagggctaaggcaaagtcaataatgcaaatgcaagagatg 19845484  T
Q  140 a 140  Q
    |    
T  19845485 a 19845485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 1233869 - 1233816
Alignment:
Q  394 agaagaagaggaaaggagactggtgtgttgtttcagatacaagagaagaactag 447  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  1233869 agaagaagaagaaaggagactggtgtgttgcttcggatacaagagaagaactag 1233816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 6205448 - 6205492
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6205448 aaatggggtaaattgaggaagcctaaatggagcaaagatggactc 6205492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 39062899 - 39062968
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| ||||||| |||| |||||||||||  |||| |||||||| |||||||||||||    
T  39062899 ccacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaacaaagatggactc 39062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 39063841 - 39063805
Alignment:
Q  527 taaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||||||||||||||||||    
T  39063841 taaattgaggaaacctaaatggagcaaagatggactc 39063805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 494 - 557
Target Start/End: Complemental strand, 39062288 - 39062225
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagat 557  Q
    |||||||||| ||||| ||||||| ||||||| ||||||||  ||||| |||||||||||||||    
T  39062288 ccacatgtcatacatctatgacttgaaatgggataaattgaacaaaccaaaatggagcaaagat 39062225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 41282955 - 41283025
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||||||||||    |||||  |||||||||| |||| ||||||||| |||||||||||||    
T  41282955 ccacatgtcacacatccatgatggtaaatgatgtaaattgagcaaacttaaatggagtaaagatggactcc 41283025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 565
Target Start/End: Complemental strand, 42148724 - 42148678
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  42148724 aaatgggataaattgagaaaacataaatggagcaaagatggactcct 42148678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 29762259 - 29762300
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgag 535  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  29762259 ccacatgtcacacatccatgtcttgagatggggtaaattgag 29762300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 41282851 - 41282900
Alignment:
Q  390 gagaagaagaagaggaaaggagactggtgtgttgtttcagatacaagaga 439  Q
    ||||||||||||| |||||| | | || ||||||||||||||||||||||    
T  41282851 gagaagaagaagaagaaaggtggcaggcgtgttgtttcagatacaagaga 41282900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 34260184 - 34260116
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||    
T  34260184 cacatgtcacacatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 34260116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 34262186 - 34262254
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| |||| |||||||||||||||||||||   |||||||||||||||| ||||    
T  34262186 cacatgtcacacatccataacttaaaatggggtaaattgaggaaaggaaaatggagcaaagatgaactc 34262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 6829989 - 6830057
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||| ||||    
T  6829989 cacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 6830057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 6826626 - 6826558
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| | |  |||||||||||||||||||||   |||||||||||||||| ||||    
T  6826626 cacatgtcacacatccattattagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 6826558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 10840011 - 10840080
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||     | |||||||||||||||| ||||||||||| ||| ||||||||||||    
T  10840011 ccacatgtcacacatccaaagaataaaatggggtaaattgaagaaacctaaatagagtaaagatggactc 10840080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 18066292 - 18066356
Alignment:
Q  498 atgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||| | |||||||||||||||| ||||    
T  18066292 atgtcagacatctatgacttaaaatggg-taaattgaggaaagcaaaatggagcaaagatgaactc 18066356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 3295797 - 3295865
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||| ||||||||    ||||||||||||| ||| ||||||||||| |||||||| ||||||    
T  3295797 cacatgtcacatatccatgatggtaaatggggtaaatggagcaaacctaaatgaagcaaagacggactc 3295865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 42578778 - 42578709
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  42578778 ccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 42578709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 6462615 - 6462684
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| | ||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  6462615 ccacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 6462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 7870376 - 7870441
Alignment:
Q  498 atgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||| || |||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  7870376 atgtcacacatctataacttcaaatggggtaaattgagaaagtctaaatggagcaaagatggactc 7870441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 501 - 558
Target Start/End: Original strand, 8814483 - 8814540
Alignment:
Q  501 tcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggagcaaagatg 8814540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 11519419 - 11519350
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||| |||| || |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  11519419 ccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaattgagcaaagatgaactc 11519350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 42503921 - 42503990
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||| ||||  |  ||||||||||||||||||| ||||||||||||||||||||||||    
T  42503921 ccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagcaaagatggactc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 42503093 - 42503029
Alignment:
Q  496 acatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatgga 560  Q
    |||||||||||||| ||||  | |||||||||||||||||||||| |||||||||||||||||||    
T  42503093 acatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaaagatgga 42503029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 563
Target Start/End: Complemental strand, 38443762 - 38443695
Alignment:
Q  496 acatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||| || | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||    
T  38443762 acatgtcacgcaactatgacttgaaatggggtaaattgtggaaacttaaatggagcaaagatggactc 38443695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 11520091 - 11520158
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggact 562  Q
    ||||||||||||||| ||||||| |||||| |||||||||| ||||||||||  | ||||||||||||    
T  11520091 cacatgtcacacatctatgactttaaatggtgtaaattgagaaaacctaaataaaacaaagatggact 11520158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 17943014 - 17943073
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaa 554  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||   ||||||||||||    
T  17943014 cacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaa 17943073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 38444464 - 38444526
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaaga 556  Q
    |||||||||||||||| || |||| |||| |||||||||||||||| ||||||||||| ||||    
T  38444464 ccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaaga 38444526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 38443103 - 38443034
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    ||||||||||||| ||| | || ||||||||||||||||||||||    
T  38443103 ccacatgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatggactc 38443034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 12203350 - 12203412
Alignment:
Q  502 cacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||| ||||||| ||||||  |||||||||||||   ||||||||||||||||||||||    
T  12203350 cacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactcc 12203412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 564
Target Start/End: Original strand, 12447778 - 12447840
Alignment:
Q  502 cacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||| ||||||| ||||||  |||||||||||||   ||||||||||||||||||||||    
T  12447778 cacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactcc 12447840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 17938244 - 17938175
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||| || ||||||||||  |||||||||||||||||||| |||   |||||||||||||||| ||||    
T  17938244 ccacatttcgcacatccatgtattcaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 17938175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 38443623 - 38443667
Alignment:
Q  519 aaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  38443623 aaatggggtaaatggagcaaacttaaatggagcaaagatggactc 38443667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 6461949 - 6461878
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||| ||||| || |||| |||||   ||||||||| ||||| |||||||||||||||| ||||||    
T  6461949 ccacatgtcatacatctataacttgaaatgaaataaattgagcaaaccgaaatggagcaaagatgaactcct 6461878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 17923928 - 17923866
Alignment:
Q  501 tcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||| ||||||| |||| ||||||||||| ||||  |||||||| |||| ||||||||    
T  17923928 tcacacatctatgacttgaaattgggtaaattgaagaaatttaaatggatcaaaaatggactc 17923866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 563
Target Start/End: Original strand, 34587364 - 34587401
Alignment:
Q  526 gtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  34587364 gtaaattgaggaaacttaaatggagcaaagatgaactc 34587401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 39311371 - 39311440
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||| ||||||| ||||||||||||||||| || | ||||||||||||||||||||||    
T  39311371 ccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggagcaaagatggactc 39311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 32159521 - 32159591
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||||||| |   | |||||||||||||||||||||||||||||||||||||||| |||||    
T  32159521 ccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagcaaagatgcactcc 32159591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 39310465 - 39310396
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| || |||| ||||||| |||||||||||| | ||||||||||||||||||||||    
T  39310465 ccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggactc 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 44516854 - 44516785
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||| || |||| ||||| |||||||| |||||||||||||||| ||||||| |||||    
T  44516854 ccacatgtcacacatctatcacttaaaatgaggtaaattaaggaaacctaaatggatcaaagatagactc 44516785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 24484852 - 24484784
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggact 562  Q
    |||||||||||||||| || |||| |||| || |||||||||||| | |||||||||||||||||||||    
T  24484852 ccacatgtcacacatctataacttgaaataggataaattgaggaatcttaaatggagcaaagatggact 24484784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 36386035 - 36386103
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||   |||||||||||||||| ||||    
T  36386035 cacatgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 36386103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 32158866 - 32158804
Alignment:
Q  496 acatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||||||||||||| |   | |||||||||||||||||||||||||||||||||| |||||    
T  32158866 acatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagcagagatg 32158804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 5469963 - 5470032
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||| |    ||||||| ||||||||| |||| ||||||||||||||||||||||    
T  5469963 ccacatgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactc 5470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 36385818 - 36385886
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| |||  ||||||||||||||||| |||   |||||||||||||||| ||||    
T  36385818 cacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 36385886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 564
Target Start/End: Original strand, 31414880 - 31414917
Alignment:
Q  527 taaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31414880 taaattgaggaaacttaaatggagcaaagatggactcc 31414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 558
Target Start/End: Original strand, 21857537 - 21857601
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||| ||||| ||||| || |||| ||||||| |||||||||||||  |||||||||||||||||    
T  21857537 ccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 558
Target Start/End: Original strand, 21913400 - 21913464
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||| ||||| ||||| || |||| ||||||| |||||||||||||  |||||||||||||||||    
T  21913400 ccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 525 - 565
Target Start/End: Original strand, 45621897 - 45621937
Alignment:
Q  525 ggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  45621897 ggtaaatggagcaaacctaaatggagcaaagatggactcct 45621937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 10924 - 10856
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||   |||||||||||||||| ||||    
T  10924 cacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 5956507 - 5956437
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||| ||||||    
T  5956507 cacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactcct 5956437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 5960993 - 5961061
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||| |||  |||||||||||||||||||||   |||||||||||||||| ||||    
T  5960993 cacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagatgcactc 5961061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 43844862 - 43844794
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||   |||||||||||||||| ||||    
T  43844862 cacatgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 43844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 4126761 - 4126698
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||   ||||||||||||||||    
T  4126761 cacatgtcacgcatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagatg 4126698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 10270927 - 10270865
Alignment:
Q  496 acatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||||||||||| ||||||| |||| |||||||| ||| | ||||||||||||||| ||||    
T  10270927 acatgtcacacatctatgacttaaaattgggtaaatagagcacacctaaatggagcaatgatg 10270865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 498 - 556
Target Start/End: Original strand, 43845891 - 43845949
Alignment:
Q  498 atgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaaga 556  Q
    ||||| |||||||||| ||||||||||||||||||||| |||   ||||||||||||||    
T  43845891 atgtcgcacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaaga 43845949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 39021002 - 39020961
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgag 535  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  39021002 ccacatgtcacacatccatgtcttgaaatggggtaaattgag 39020961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 563
Target Start/End: Original strand, 35753064 - 35753137
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaat----tgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| ||||| | |||||||||||||    |||| |||| ||||||||||||||||||||||    
T  35753064 ccacatgtcatacatctatgacgtgaaatggggtaaataaattgagtaaacataaatggagcaaagatggactc 35753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 35752394 - 35752326
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||| |||| || ||||||| ||||||||| ||||| |||||||||||| ||| ||||    
T  35752394 ccacatgtcatacatctatga-ttgaaatgggataaattgagcaaaccaaaatggagcaaacatgaactc 35752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 48204216 - 48204147
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||| ||||||||||    |||| || ||||| ||| |||| ||||||||||||||||||||||    
T  48204216 ccacatgtcatacatccatgatggtaaataggataaatggagcaaacttaaatggagcaaagatggactc 48204147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 563
Target Start/End: Complemental strand, 120138 - 120073
Alignment:
Q  498 atgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    ||||||| |||| || |||| ||||||||||||||||||||| |||||||||||||||||| ||||    
T  120138 atgtcacgcatctataacttgaaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 2639779 - 2639717
Alignment:
Q  496 acatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatg 558  Q
    |||||| ||||||| || |||| ||||||||||||||||| |||  |||||||||||||||||    
T  2639779 acatgttacacatctataacttgaaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 501 - 559
Target Start/End: Original strand, 126265 - 126322
Alignment:
Q  501 tcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatgg 559  Q
    ||||||||| || |||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  126265 tcacacatctataacttaaaatggg-taaattgagaaaacctaaatggagcaaaaatgg 126322  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 563
Target Start/End: Complemental strand, 31600517 - 31600448
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactc 563  Q
    |||||||||||||||||||||    ||||||||||||| ||| ||  ||||||||||||  |||||||||    
T  31600517 ccacatgtcacacatccatgatgataaatggggtaaatggagcaagtctaaatggagcatggatggactc 31600448  T

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Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 18550 - 18479
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcct 565  Q
    |||||||||||||||||||||    |||||| |||||||||  |||| ||||||||| ||||||||||||||    
T  18550 ccacatgtcacacatccatgatggtaaatggtgtaaattgaacaaacttaaatggagtaaagatggactcct 18479  T

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Target: scaffold0330 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 559
Target Start/End: Original strand, 13241 - 13306
Alignment:
Q  494 ccacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatgg 559  Q
    |||||||||||||||| || |  | ||| ||  |||||||||||||||||||||||||||||||||    
T  13241 ccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaagatgg 13306  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 52332 - 52263
Alignment:
Q  495 cacatgtcacacatccatgacttcaaatggggtaaattgaggaaacctaaatggagcaaagatggactcc 564  Q
    ||||||||||||||| |||  || ||| || |||||| ||||||||  |||||||||||||||| |||||    
T  52332 cacatgtcacacatctatgcattgaaaaggagtaaatggaggaaacaaaaatggagcaaagatgaactcc 52263  T

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