View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14204_low_2 (Length: 478)

Name: NF14204_low_2
Description: NF14204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14204_low_2
NF14204_low_2
[»] chr1 (4 HSPs)
chr1 (138-463)||(17302286-17302609)
chr1 (6-142)||(17302649-17302785)
chr1 (295-447)||(15504202-15504354)
chr1 (295-442)||(2260079-2260226)
[»] chr4 (6 HSPs)
chr4 (295-447)||(11345996-11346148)
chr4 (297-441)||(47491998-47492142)
chr4 (310-441)||(51305258-51305388)
chr4 (298-442)||(34113279-34113423)
chr4 (334-419)||(43901842-43901926)
chr4 (147-175)||(13807592-13807620)
[»] chr7 (2 HSPs)
chr7 (362-449)||(44701546-44701633)
chr7 (355-441)||(19562115-19562202)
[»] chr6 (1 HSPs)
chr6 (299-440)||(6725944-6726085)
[»] chr5 (2 HSPs)
chr5 (295-442)||(11429783-11429933)
chr5 (390-448)||(3003711-3003769)
[»] chr8 (1 HSPs)
chr8 (355-449)||(10517595-10517689)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 138 - 463
Target Start/End: Complemental strand, 17302609 - 17302286
Alignment:
Q  138 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaaactatttctag 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17302609 atacagatgcttattggatgtcgatgtaaaactattttacactgtcgctgcgtcatacaataataaactaagtctagttgcgaattaaa-ctatttctag 17302511  T
Q  238 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagtggtggtttatgtagaatcacgg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  17302510 agatcaaactcgaataccaatcgagttcgtaggagggtattaacacttgcgtccaaattagtgctcgtttggtttagcggtggtttctgtagaatcacag 17302411  T
Q  338 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17302410 tgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcaagcttgccccgggatgtgatatttgcattgcaaaagctaatcca 17302311  T
Q  438 aacacgtactaaagaaatgtgacatt 463  Q
    |||||||||| |||||||||||||||    
T  17302310 aacacgtact-aagaaatgtgacatt 17302286  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 17302785 - 17302649
Alignment:
Q  6 tttctatattagtgattttaatagtaattatgattgacgtaagtagttttagtttttaatgatatgtcaattcggggtatatattgattaatttttagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17302785 tttctatattagtgattttaatagtaattatgattgacgtaagtagttttagtttttaatgatatgtcaattcggggtatatattgattaattttgagtt 17302686  T
Q  106 tattaggcatgcactgacagtgtaaactagttataca 142  Q
    |||||||||||||||||||||||||||||||||||||    
T  17302685 tattaggcatgcactgacagtgtaaactagttataca 17302649  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 295 - 447
Target Start/End: Complemental strand, 15504354 - 15504202
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||||||||    
T  15504354 ttagtgctcgtttggtttagcggtggttactagaaaatcacggtggattttcacgttttcacaaaagcttacttttgtagcttcaggatttccacgtcca 15504255  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 447  Q
    |||| || ||  | |||||||||||| || |||||||||||||||||| ||||    
T  15504254 gcttacctcgaaacgtgatatttgcactgtaaaagctaatccaaacacatact 15504202  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 442
Target Start/End: Original strand, 2260079 - 2260226
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||||| ||||||||||  |||||||| |  ||||| |||||| ||||| | |||| || ||||| ||| ||||||||||| |  |||| ||||||||    
T  2260079 ttagtgctggtttggtttatcggtggtttctagagaattacggtggatttttatgttttcataaaagtttgtttttgtagcttcaagattttcacgtcca 2260178  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
     ||| || ||| | ||||| ||||| |||||||||||||  |||||||    
T  2260179 acttacctcggaacgtgatctttgcgttgcaaaagctaactcaaacac 2260226  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 447
Target Start/End: Original strand, 11345996 - 11346148
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtcca 394  Q
    |||||| ||||||||||| | |||||||| | || ||||||||| | ||| || ||||  |||||| |||||||||||||||| || |||| |||||| |    
T  11345996 ttagtgttcgtttggtttggcggtggtttttataaaatcacggtaagtttccatgtttctacaaaaccttgcttttgtagcttcaggattttcacgtcta 11346095  T
Q  395 gcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtact 447  Q
    ||||||| ||| |  |||||||||  |||||||||||||||||||||| ||||    
T  11346096 gcttgcctcggaacatgatatttgtcttgcaaaagctaatccaaacacatact 11346148  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 47492142 - 47491998
Alignment:
Q  297 agtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagc 396  Q
    |||||| ||||||||||  |||||||| |  ||||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || ||||||| |||||||    
T  47492142 agtgcttgtttggtttaacggtggtttttaaagaattacggtggattttcacgttttcacaaaatcttacttttgtaacttcaggatttccatgtccagc 47492043  T
Q  397 ttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 441  Q
    ||||| |  || |||||||||||  |||||||| |||||||||||    
T  47492042 ttgcctctagacgtgatatttgccctgcaaaagttaatccaaaca 47491998  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 441
Target Start/End: Original strand, 51305258 - 51305388
Alignment:
Q  310 tttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatg 409  Q
    ||||| |||||||| |  |||||||||||||||||||| |||| ||||||| |||| |||| ||| || ||||||| ||| |||| |||||| ||||| |    
T  51305258 tttagcggtggttttttaagaatcacggtgaattttcatgttttcacaaaaacttgttttt-tagtttgagaattttcacatccaacttgcctcgggacg 51305356  T
Q  410 tgatatttgcattgcaaaagctaatccaaaca 441  Q
    |||||||| || ||||||||||||||||||||    
T  51305357 tgatattttcactgcaaaagctaatccaaaca 51305388  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 442
Target Start/End: Complemental strand, 34113423 - 34113279
Alignment:
Q  298 gtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagct 397  Q
    |||||||||||||||||   |||||| |  |||||||||||| |||||||||||| |||||||| || |||||||| ||| |  ||||| || ||||| |    
T  34113423 gtgctcgtttggtttagcaatggtttctagagaatcacggtggattttcacgttttcacaaaagtttacttttgtaccttcaagatttctacatccagtt 34113324  T
Q  398 tgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
    |  | ||||| |||||||| ||| ||||||||||||| |||||||    
T  34113323 tatctcgggacgtgatattcgcaatgcaaaagctaattcaaacac 34113279  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 419
Target Start/End: Complemental strand, 43901926 - 43901842
Alignment:
Q  334 acggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgc 419  Q
    |||||| |||||||||||| ||||||||||||| |||||||||| || |||||||| |||| |||| |  |||| |||||||||||    
T  43901926 acggtggattttcacgttttcacaaaagcttgc-tttgtagcttcaggatttccacatccaacttgacttgggacgtgatatttgc 43901842  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 13807620 - 13807592
Alignment:
Q  147 cttattggatgtcgatgtaaaactatttt 175  Q
    |||||||||||||||||||||||||||||    
T  13807620 cttattggatgtcgatgtaaaactatttt 13807592  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 44701546 - 44701633
Alignment:
Q  362 cttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 449  Q
    ||||||||||||  ||||| |||||||||||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||||||    
T  44701546 cttgcttttgtacttttaggatttccacgtccagcttaactcgggacgtgatatttacactgcaaaagctaatccaaacacgtactaa 44701633  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 441
Target Start/End: Original strand, 19562115 - 19562202
Alignment:
Q  355 acaaaagcttgctttt-gtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaaca 441  Q
    |||||||||| ||||| |||||||||| |||| || ||| | |||| | |||||  ||||||||||  ||||||||||||||||||||    
T  19562115 acaaaagcttactttttgtagctttaggattttcaggtctaacttgtctcgggacatgatatttgccatgcaaaagctaatccaaaca 19562202  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 6725944 - 6726085
Alignment:
Q  299 tgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgcttttgtagctttagaatttccacgtccagctt 398  Q
    |||| ||||| ||||| |||||||| | |||||||| |||| |||||||||||| ||||||| ||||| ||| || ||  || ||||||| ||||  |||    
T  6725944 tgctggtttgatttagcggtggtttctatagaatcatggtggattttcacgttttcacaaaaacttgcgtttataactccaggatttccaagtcctactt 6726043  T
Q  399 gccccgggatgtgatatttgcattgcaaaagctaatccaaac 440  Q
    ||| |||||||||| |||| |  |||||||||||||||||||    
T  6726044 gcctcgggatgtgagatttacggtgcaaaagctaatccaaac 6726085  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 442
Target Start/End: Complemental strand, 11429933 - 11429783
Alignment:
Q  295 ttagtgctcgtttggtttagtggtggtttatgtagaatcacggtgaattttcacgtttacacaaaagcttgc----ttttgtagctttagaatttccacg 390  Q
    |||||||| ||||||||||||||||| || |  ||||||| | |  |||||||||||| ||||||| |||||    ||||||| ||| || ||| |||||    
T  11429933 ttagtgcttgtttggtttagtggtggattctagagaatcatgatagattttcacgttttcacaaaaacttgcgaacttttgtaacttcaggatt-ccacg 11429835  T
Q  391 tccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacac 442  Q
    |||| |||||| ||||| ||||||||| ||  |||||||||| |||||||||    
T  11429834 tccaacttgcctcgggacgtgatatttacaccgcaaaagctattccaaacac 11429783  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 3003711 - 3003769
Alignment:
Q  390 gtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtacta 448  Q
    |||||||||||| ||||| |||| |||| || ||||||||||||||||||||| |||||    
T  3003711 gtccagcttgcctcgggacgtgaaatttccagtgcaaaagctaatccaaacacatacta 3003769  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 10517689 - 10517595
Alignment:
Q  355 acaaaagcttgcttttgtagctttagaatttccacgtccagcttgccccgggatgtgatatttgcattgcaaaagctaatccaaacacgtactaa 449  Q
    ||||||| || |||||||||||| |  ||||  || || ||||| || | ||||||||||||||| |||| |||| |||||||||||| ||||||    
T  10517689 acaaaagtttacttttgtagcttcaagatttttacatctagcttacctcaggatgtgatatttgccttgcgaaagttaatccaaacacatactaa 10517595  T

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