View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14204_low_4 (Length: 341)
Name: NF14204_low_4
Description: NF14204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14204_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 23030878 - 23031188
Alignment:
| Q |
18 |
ccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttaaccgttcattgattagatcattttcctatgtcattg |
117 |
Q |
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| T |
23030878 |
ccaactacaaaaccaccattcactcttggtgaagtcaagaaagcaattccaccacattgttttcaccgttcattgattagatcattttcctatgtcattg |
23030977 |
T |
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| Q |
118 |
ttgaccttaccatagcatcaatccttgtctacatagccacaaattattttcctacccttccacataacctctcatttttggcgtgggccgtttattgggt |
217 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23030978 |
ttgaccttaccatagcatcaatccttgcctatatagccacaaattactttcctacccttccacataacctctcatttttggcgtggcccgtttattgggc |
23031077 |
T |
|
| Q |
218 |
catccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23031078 |
catccaaggatgcattctaaccggagtttgggtcattgcacatgaatgtggccatcatgcatttagtaattatcaatgggtcgacgatttagttggcctt |
23031177 |
T |
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| Q |
318 |
gttcttcattc |
328 |
Q |
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|| |||||||| |
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| T |
23031178 |
gtccttcattc |
23031188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
220 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
296 |
Q |
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||||||| |||||||| ||||| |||||||| || || || |||||||| ||||||||||||||||| || |||||| |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 37019912 - 37020015
Alignment:
| Q |
219 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
318 |
Q |
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|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
319 |
ttct |
322 |
Q |
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|||| |
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| T |
37020012 |
ttct |
37020015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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