View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14205_high_12 (Length: 338)
Name: NF14205_high_12
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14205_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 167 - 328
Target Start/End: Complemental strand, 39576787 - 39576626
Alignment:
| Q |
167 |
aggtaataatttagatgtattttattaatgaagttggtatttggttattccattgttggtaggagtagagagtacacataattccattgctgtattattg |
266 |
Q |
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| T |
39576787 |
aggtaataatttagatgtattttattaatgaaattggtatttggttattccattgttggtaggagtagagagtacacataattccattgctgtattattg |
39576688 |
T |
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| Q |
267 |
acagcttggtgatagaacaacccaattatgaagtcaaacaaattattgtgcatttatctgtg |
328 |
Q |
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| T |
39576687 |
acagcttggtgatagaacaacccgattatgaagtcaaacaaattattgtgcatttatctgtg |
39576626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 39576951 - 39576866
Alignment:
| Q |
1 |
ctatggacccttaattaatcattattccttaaaattttcaatnnnnnnntaaattaaaatgtaagtcatgtagatcaaaatgatag |
86 |
Q |
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| T |
39576951 |
ctatggacccttaattaatcattattccttaaaattttcaataaaaatataaattaaaatgtaagtcatgtagatcaaaatgatag |
39576866 |
T |
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