View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14205_high_16 (Length: 311)

Name: NF14205_high_16
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14205_high_16
NF14205_high_16
[»] chr3 (15 HSPs)
chr3 (30-289)||(9108743-9109002)
chr3 (93-281)||(8746911-8747099)
chr3 (96-289)||(8755530-8755723)
chr3 (90-230)||(9019296-9019436)
chr3 (90-220)||(9101246-9101376)
chr3 (90-281)||(9029070-9029261)
chr3 (90-268)||(9034590-9034768)
chr3 (98-230)||(8965284-8965416)
chr3 (115-268)||(9015393-9015546)
chr3 (90-224)||(9023464-9023598)
chr3 (127-230)||(8962569-8962672)
chr3 (112-230)||(9112115-9112233)
chr3 (117-230)||(8957129-8957242)
chr3 (98-230)||(8988353-8988485)
chr3 (117-281)||(9026111-9026275)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 9109002 - 9108743
Alignment:
Q  30 tatacatagatcatcacttaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagaca 129  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9109002 tatatatagatcatcaattaataatcatcactagcacagaataaaacaaaaataacgactatgtttttagttcttcaagagtgcaagcattgacaagaca 9108903  T
Q  130 attgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccg 229  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108902 attgaagctccgatcatggccactgaacttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccg 9108803  T
Q  230 acaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108802 acaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 9108743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 8747099 - 8746911
Alignment:
Q  93 tttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacct 192  Q
    |||||||| ||| ||||  || ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||  ||||||| ||||||||||||    
T  8747099 tttttagtgcttgaagatggcgagcattgacaacacaattgaaactccaatcatagccactgaatttgtaacagatccaacagctccaacatcaggacct 8747000  T
Q  193 gatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 281  Q
    | |||||||||||| ||||||||||||||||| || ||  |||||| ||| || ||||| | ||||||||||||||  || ||||||||    
T  8746999 ggtgctggagccaacgagggactgaggtcttgggcagaggccagggtggcggcgaagatgaagacgaaaaagaaggagaagaacttcat 8746911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 289
Target Start/End: Complemental strand, 8755723 - 8755530
Alignment:
Q  96 ttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgat 195  Q
    ||||||||| ||||  || ||||| ||||| | ||| |||||||| ||||| || |||||||||||||||||||| ||||| ||| |||||||| ||| |    
T  8755723 ttagttcttgaagatggcgagcatagacaaaataatcgaagctccaatcatagcaactgaatttgtaacagatccagcagcaccggcatcaggatctggt 8755624  T
Q  196 gctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatg 289  Q
    || |||||||| |||||||||||||||||||||||  ||| ||  || || |||| ||| |||||||||||||| |||||||||||||||||||    
T  8755623 gccggagccaacgagggactgaggtcttgagccgaagccacggctgctgcgaagacaacaacgaaaaagaaggcgaaaaacttcattgatgatg 8755530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 9019436 - 9019296
Alignment:
Q  90 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 189  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||| || |||||| | |||||||||||   ||| || |||||||||    
T  9019436 atgttttcagttcttcaagatggcaagcattgacaacacaattgaagctccgatcatagcaactgaactcgtaacagatccacaagccccaacatcagga 9019337  T
Q  190 cctgatgctggagccaatgagggactgaggtcttgagccga 230  Q
    |||| ||| |||||  |||||||||| ||||||||||||||    
T  9019336 cctggtgccggagcggatgagggactaaggtcttgagccga 9019296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 9101376 - 9101246
Alignment:
Q  90 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 189  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||||  |||||||     
T  9101376 atgtttttagtgcttaaagatggcgagcattgacaatacaattgaaactccgatcatagccactgaacttgtaacagaaccagcagctccagcatcaggg 9101277  T
Q  190 cctgatgctggagccaatgagggactgaggt 220  Q
    |||| |||||||||||| |||||||||||||    
T  9101276 cctggtgctggagccaacgagggactgaggt 9101246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 281
Target Start/End: Complemental strand, 9029261 - 9029070
Alignment:
Q  90 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 189  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| |||||| ||||||||  ||||||||    
T  9029261 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccgctgaacttgtaatagatccagcagctccagcatcagga 9029162  T
Q  190 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 281  Q
    |||| |||||||||||| || ||||| |||||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9029161 cctggtgctggagccaacgaaggactaaggtcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9029070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 9034768 - 9034590
Alignment:
Q  90 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 189  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||||||| |||||||||| ||||| ||| ||| ||||||||| ||||||||  ||||||||    
T  9034768 atgtttttagtgcttgaagatggcgagcattgacaacacaattgaaactccgatcatagccaccgaacttgcaacagatccagcagctccagcatcagga 9034669  T
Q  190 cctgatgctggagccaatgagggactgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 268  Q
    |||| ||| |||||||| || ||||| |||||||| || ||  ||| |  |||||| |||||  |||||||||||||||    
T  9034668 cctggtgccggagccaacgaaggactaaggtcttgggcagaggccacgatggcagcgaagatggcgacgaaaaagaagg 9034590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 8965416 - 8965284
Alignment:
Q  98 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 197  Q
    ||||||| |||| ||| ||||||||||  |||||||||||||||||||| ||||  ||| ||||||||||||||||||||||  | ||||||| || |||    
T  8965416 agttcttgaagattgcgagcattgacagcacaattgaagctccgatcattgccatagaacttgtaacagatccggcagctccagcgtcaggacttggtgc 8965317  T
Q  198 tggagccaatgagggactgaggtcttgagccga 230  Q
    ||||||||| || ||||| |||||||| |||||    
T  8965316 tggagccaacgacggactaaggtcttgggccga 8965284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 268
Target Start/End: Complemental strand, 9015546 - 9015393
Alignment:
Q  115 agcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggac 214  Q
    ||||||||||| ||||||||| |||| | ||| | |||||||||||||||| |||| || |||||| |||||||||||| ||| |||| ||| ||||| |    
T  9015546 agcattgacaatacaattgaaactccaaccatagtcactgaatttgtaacatatccagctgctccggcatcaggacctggtgccggagacaacgaggggc 9015447  T
Q  215 tgaggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaagg 268  Q
    ||||||||||||||||  | |  |||||||| || ||  |||||||||||||||    
T  9015446 tgaggtcttgagccgaggcgatagaggcagccaacatggcgacgaaaaagaagg 9015393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 9023598 - 9023464
Alignment:
Q  90 atgtttttagttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcagga 189  Q
    ||||||||||| ||| ||||  || ||||||||||| ||||  |||  ||||| ||| ||||||||| ||||||||||||| ||||||||  ||||||||    
T  9023598 atgtttttagtgcttgaagatggcgagcattgacaatacaaccgaaattccgaccatagccactgaacttgtaacagatccagcagctccagcatcagga 9023499  T
Q  190 cctgatgctggagccaatgagggactgaggtcttg 224  Q
    |||| ||| |||||||| |||||||| ||||||||    
T  9023498 cctggtgccggagccaacgagggactaaggtcttg 9023464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 8962672 - 8962569
Alignment:
Q  127 acaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgag 226  Q
    |||||||||||||||||||| ||||| |||  || ||||||||||||| ||||  |||||||||||| ||||||||| || |||||||| |||||||| |    
T  8962672 acaattgaagctccgatcatagccacagaacctgcaacagatccggcaactccagcatcaggacctggtgctggagctaacgagggactaaggtcttggg 8962573  T
Q  227 ccga 230  Q
    ||||    
T  8962572 ccga 8962569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 9112233 - 9112115
Alignment:
Q  112 gcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagg 211  Q
    |||||||||||||| |||||  ||||||| ||||| ||||||| |||||||| ||||||  ||||||||  ||||||  ||| ||| |||||||| ||||    
T  9112233 gcaagcattgacaacacaatcaaagctcccatcatagccactggatttgtaagagatccaacagctccggtatcaggtgctggtgccggagccaacgagg 9112134  T
Q  212 gactgaggtcttgagccga 230  Q
    ||||||||||||| |||||    
T  9112133 gactgaggtcttgggccga 9112115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 8957242 - 8957129
Alignment:
Q  117 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 216  Q
    ||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||  | |||||||| | ||||||||| || || |||||     
T  8957242 cattgacagcacaattgaagctccgatcatagccacagaacttgtaacaaatccggcagctccagcgtcaggaccgggtgctggagctaacgacggacta 8957143  T
Q  217 aggtcttgagccga 230  Q
    |||||||| |||||    
T  8957142 aggtcttgggccga 8957129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 8988485 - 8988353
Alignment:
Q  98 agttcttcaagagtgcaagcattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgc 197  Q
    ||||||| ||||  || ||||||||||  || ||||||||||||||||| |||||  || ||||| |||| | ||||||||| || |||||||||| |||    
T  8988485 agttcttgaagatagcgagcattgacagtacgattgaagctccgatcatagccacataacttgtagcagaactggcagctccaacgtcaggacctggtgc 8988386  T
Q  198 tggagccaatgagggactgaggtcttgagccga 230  Q
    ||||| ||| |||||||| |||||||| |||||    
T  8988385 tggagacaacgagggactaaggtcttgggccga 8988353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 9026275 - 9026111
Alignment:
Q  117 cattgacaagacaattgaagctccgatcatggccactgaatttgtaacagatccggcagctccgacatcaggacctgatgctggagccaatgagggactg 216  Q
    ||||||||| |||| |||| |||||||||| ||||||||| ||||||||||||| ||| ||||  |||||| ||||| |||||||||||| || |||||     
T  9026275 cattgacaatacaactgaaactccgatcattgccactgaacttgtaacagatccagcaactccagcatcagaacctggtgctggagccaacgaaggacta 9026176  T
Q  217 aggtcttgagccgacaccagggaggcagcaaagataacgacgaaaaagaaggcaaaaaacttcat 281  Q
    || ||||| || ||  ||| || ||| || ||||| | ||| ||||||||||  || ||||||||    
T  9026175 agatcttgggcagaggccacggtggcggcgaagatgatgaccaaaaagaaggagaagaacttcat 9026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University