View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14205_high_7 (Length: 366)
Name: NF14205_high_7
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14205_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 4340608 - 4340255
Alignment:
| Q |
1 |
aatataagctgtagcaagtatctacataaataagaaattttagctcatagttgtgatttacttacagctgaattgaactgaaaaggccatcactagacta |
100 |
Q |
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| T |
4340608 |
aatataagctgtagcaagtatctacataaataagaaattttagctcatagttgtgatttacttacagctgaattgaactgaaaaggccatcactagacta |
4340509 |
T |
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| Q |
101 |
ctaaactcagaaacttctgaaaaacagttataagactcagaacctaagagcaaacacatttcaaaatgattaatattaccttgttcagattgttgcggta |
200 |
Q |
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| T |
4340508 |
ctaaactcaaaaacttctgaaaaacagttataagactcggaacctaag--caaacatatttcaaaatgattaatattaccttgttcagattgttgcggta |
4340411 |
T |
|
| Q |
201 |
cgtctgcgaatgataaagaagaatattaatgaatgaccgtcataaattaaattaccaatggcttaaaatgtatgcattaccaaaaaatgaatgcttttat |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4340410 |
cgtctgcgaatgataaagaagaatattaatgtatgaccgtcataaattaaattaccaatggcttaaaatgtatgcattaccacaaaatgaatgcttttat |
4340311 |
T |
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| Q |
301 |
ctttttgattacctaccacaaaatggatgttttgaagatggacttttttatctctg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4340310 |
ctttttgattacctaccacaaaatggatgttttgaagatggatttttttatctctg |
4340255 |
T |
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