View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14205_high_8 (Length: 361)

Name: NF14205_high_8
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14205_high_8
NF14205_high_8
[»] chr8 (3 HSPs)
chr8 (16-301)||(21026782-21027067)
chr8 (16-301)||(19965929-19966214)
chr8 (143-209)||(43442265-43442331)
[»] chr7 (4 HSPs)
chr7 (16-301)||(29868463-29868748)
chr7 (143-209)||(35969133-35969199)
chr7 (143-209)||(35990545-35990611)
chr7 (143-204)||(8986696-8986757)
[»] chr1 (2 HSPs)
chr1 (16-301)||(20785601-20785886)
chr1 (16-301)||(29470175-29470460)
[»] chr4 (1 HSPs)
chr4 (144-209)||(16938480-16938545)
[»] chr6 (1 HSPs)
chr6 (143-209)||(26254730-26254796)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 21027067 - 21026782
Alignment:
Q  16 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagctctagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21027067 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagcactagc 21026968  T
Q  116 tacaaaaatgaagnnnnnnntaaagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 215  Q
    |||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21026967 tacaaaaatgaagaaaaaaatagagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 21026868  T
Q  216 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21026867 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 21026782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 19965929 - 19966214
Alignment:
Q  16 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagctctagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19965929 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagcactagc 19966028  T
Q  116 tacaaaaatgaagnnnnnnntaaagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 215  Q
    |||||||||||||       || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19966029 tacaaaaatgaagaaaaaaatagagaatttcctccttgcaagtattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 19966128  T
Q  216 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19966129 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 19966214  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 43442265 - 43442331
Alignment:
Q  143 tttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatg 209  Q
    |||||||||||  |||| ||||||||||| |||||||| || |||| |||||||| |||||| ||||    
T  43442265 tttcctccttgtgagcactgtggaaaattgggtcatccgccattcagatgttggaaaagaccagatg 43442331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 29868463 - 29868748
Alignment:
Q  16 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagctctagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29868463 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagcactagc 29868562  T
Q  116 tacaaaaatgaagnnnnnnntaaagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 215  Q
    |||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29868563 tacaaaaatgaagaaaaaaatagagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 29868662  T
Q  216 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29868663 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 29868748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 35969199 - 35969133
Alignment:
Q  143 tttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatg 209  Q
    |||||||||||  |||| ||||||||||| |||||||| || |||| |||||||| |||||| ||||    
T  35969199 tttcctccttgtgagcactgtggaaaattgggtcatccgccattcagatgttggaaaagaccagatg 35969133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 35990611 - 35990545
Alignment:
Q  143 tttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatg 209  Q
    |||||||||||  |||| ||||||||||| |||||||| || |||| |||||||| |||||| ||||    
T  35990611 tttcctccttgtgagcactgtggaaaattgggtcatccgccattcagatgttggaaaagaccagatg 35990545  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 8986696 - 8986757
Alignment:
Q  143 tttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacc 204  Q
    |||||||||||  |||| ||||||||||| |||||||| || |||| |||||||| ||||||    
T  8986696 tttcctccttgtgagcactgtggaaaattgggtcatccgccattcagatgttggaaaagacc 8986757  T

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Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 20785886 - 20785601
Alignment:
Q  16 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagctctagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20785886 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagcactagc 20785787  T
Q  116 tacaaaaatgaagnnnnnnntaaagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 215  Q
    |||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20785786 tacaaaaatgaagaaaaaaatagagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 20785687  T
Q  216 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20785686 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 20785601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 29470175 - 29470460
Alignment:
Q  16 agcattacaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagctctagc 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29470175 agcattgcaagctaaattaaaaatcaacaaaggagaaaagagcatgggaaataagtataagaagagtttcaacaaacaagaagcagttggaagcactagc 29470274  T
Q  116 tacaaaaatgaagnnnnnnntaaagaatttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatgtgaagt 215  Q
    |||||||||||||       || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29470275 tacaaaaatgaagaaaaaaatagagaatttcctccttgcaagcattgtggaaaattcggccatcctcctttcaaatgttggagaagacctgatgtgaagt 29470374  T
Q  216 gtgacaagtgcaacaaacttgggcatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 301  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470375 gtgacaagtacaacaaacttgggtatcacgagagaatttgcagaagcaattttcaacaaagtaatgaggctcaagctgaagatcaa 29470460  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 16938480 - 16938545
Alignment:
Q  144 ttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatg 209  Q
    ||||||||||  |||||||||||||||| |||||||| || |||| |||||||| |||||| ||||    
T  16938480 ttcctccttgtgagcattgtggaaaattgggtcatccgccattcagatgttggaaaagaccagatg 16938545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 26254730 - 26254796
Alignment:
Q  143 tttcctccttgcaagcattgtggaaaattcggtcatcctcctttcaaatgttggagaagacctgatg 209  Q
    |||||||||||  |||| ||||||||||| |||||||| || |||| |||||||| |||||| ||||    
T  26254730 tttcctccttgtgagcactgtggaaaattgggtcatccgccattcagatgttggaaaagaccagatg 26254796  T

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