View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14205_high_9 (Length: 359)

Name: NF14205_high_9
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14205_high_9
NF14205_high_9
[»] chr4 (5 HSPs)
chr4 (1-352)||(39778514-39778866)
chr4 (279-340)||(39778361-39778422)
chr4 (290-348)||(29168960-29169018)
chr4 (270-339)||(40827695-40827763)
chr4 (232-348)||(17905142-17905257)
[»] chr5 (2 HSPs)
chr5 (230-313)||(6787751-6787834)
chr5 (251-312)||(4509742-4509803)
[»] chr3 (1 HSPs)
chr3 (255-348)||(35018484-35018576)
[»] chr1 (2 HSPs)
chr1 (276-348)||(40571592-40571661)
chr1 (276-332)||(19609169-19609224)
[»] chr7 (2 HSPs)
chr7 (276-332)||(6427025-6427080)
chr7 (255-348)||(42968150-42968242)
[»] chr6 (1 HSPs)
chr6 (276-336)||(24745752-24745811)
[»] chr2 (2 HSPs)
chr2 (280-340)||(7252240-7252298)
chr2 (305-348)||(21374085-21374128)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 39778866 - 39778514
Alignment:
Q  1 tctatatccttccttccctttccaaatatctcctgctccacaaaagagtcaagattcatcagtatgtaaaacgagtttaatatcatatatcctaactgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778866 tctatatccttccttccctttccaaatatctcctgctccacaaaagagtcaagattcatcagtatgtaaaacgagtttaatatcatatatcctaactgta 39778767  T
Q  101 tnnnnnnn-gttttagacatgcatctaattatattttatctaaaatagtggacaaatatctgtgtgataagatttgattagatgtatgtgtcaaactgtt 199  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778766 taaaaaaaagttttagacatgcatctaattatattttatctaaaatagtggacaaatatctgtgtgataagatttgattagatgtatgtgtcaaactgtt 39778667  T
Q  200 ttaacaagactagtgttaggagtctcatattcgatgagataaagcctaaatataagtttataagtgaggtcgatcttcaccttacaagttggttttgaaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39778666 ttaacaagactagtgttaggagtctcatattcgatgagataaagcctaaatataagtttataagtgaggtcgatcttcaccttacaagttggttttgaaa 39778567  T
Q  300 gggtcgagttaggctcaacccaaaattttaagatggtatcaaagcctattcat 352  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39778566 gggtcgagttaggctcaacccaaaattttaagatggtatcagagcctattcat 39778514  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 39778422 - 39778361
Alignment:
Q  279 ccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatca 340  Q
    ||||||||| |||||||| |||||| ||||||||| ||||||||||||||||| ||||||||    
T  39778422 ccttacaagctggttttgtaagggttgagttaggcccaacccaaaattttaagctggtatca 39778361  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 29168960 - 29169018
Alignment:
Q  290 ggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatcaaagcctat 348  Q
    ||||||| | |||| ||||||||||||||||||||||  || ||||||| |||||||||    
T  29168960 ggttttgtaggggttgagttaggctcaacccaaaattcgaatatggtattaaagcctat 29169018  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 40827763 - 40827695
Alignment:
Q  270 cgatcttcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatc 339  Q
    ||||| |||||||||||| || ||||| ||||||  |||||||||| | || ||||||||||||||||||    
T  40827763 cgatcctcaccttacaagctgattttgtaagggttaagttaggctcga-cctaaattttaagatggtatc 40827695  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 17905142 - 17905257
Alignment:
Q  232 gatgagataaagcctaaatataagtttataagtgaggtcgatcttcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaag 331  Q
    |||||||||| || | || ||||||||||||||| ||   ||| ||||||||||||  ||||| | |||| | |||||||||  || || ||||| ||||    
T  17905142 gatgagataaggcttgaacataagtttataagtgggggtaatcctcaccttacaagccggtttggtaaggcttgagttaggcctaagcc-aaattctaag 17905240  T
Q  332 atggtatcaaagcctat 348  Q
    ||||||| |||||||||    
T  17905241 atggtattaaagcctat 17905257  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 6787751 - 6787834
Alignment:
Q  230 tcgatgagataaagcctaaatataagtttataagtgaggtcgatcttcaccttacaagttggttttgaaagggtcgagttaggc 313  Q
    |||||||||| | ||||  | ||||||||||||||||||   |||||||| |||||||| ||||||| |||||| |||||||||    
T  6787751 tcgatgagatcaggcctggacataagtttataagtgagggaaatcttcactttacaagtcggttttgtaagggttgagttaggc 6787834  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 4509742 - 4509803
Alignment:
Q  251 ataagtttataagtgaggtcgatcttcaccttacaagttggttttgaaagggtcgagttagg 312  Q
    ||||||||||||| | || ||||| |||||||||||| |||||||| | |||| ||||||||    
T  4509742 ataagtttataagaggggacgatcatcaccttacaagctggttttgtaggggttgagttagg 4509803  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 35018484 - 35018576
Alignment:
Q  255 gtttataagtgaggtcgatcttcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatcaaagcctat 348  Q
    ||||||||||| || | ||| |||||||||||| ||| |||| |||| ||||||||||| |||||  ||||| ||||||| ||||| |||||||    
T  35018484 gtttataagtgggggccatcctcaccttacaagctgggtttgtaagg-tcgagttaggcccaaccacaaattctaagatgatatcagagcctat 35018576  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 40571592 - 40571661
Alignment:
Q  276 tcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatcaaagcctat 348  Q
    ||||||||||||||||||||| || ||| ||||||||| ||| |||||  |||||||||||||||||| ||||    
T  40571592 tcaccttacaagttggttttgtaa-ggttgagttaggcccaatccaaa--tttaagatggtatcaaagtctat 40571661  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 19609224 - 19609169
Alignment:
Q  276 tcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaaga 332  Q
    ||||||||||||  ||||||| |||| | |||||||||||||||||||||| |||||    
T  19609224 tcaccttacaagccggttttgtaaggtt-gagttaggctcaacccaaaattctaaga 19609169  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 6427080 - 6427025
Alignment:
Q  276 tcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaaga 332  Q
    ||||||||||||||||||||| |||  | |||||||||||||||||||||| |||||    
T  6427080 tcaccttacaagttggttttgtaagatt-gagttaggctcaacccaaaattctaaga 6427025  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 42968242 - 42968150
Alignment:
Q  255 gtttataagtgaggtcgatcttcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatcaaagcctat 348  Q
    |||||||||||||  | ||||||| ||||||||| ||||||| || |||  ||||  || ||||| |||||| |||||||||||||||| ||||    
T  42968242 gtttataagtgagtgcaatcttcagcttacaagtcggttttgtaa-ggtaaagttctgcccaacctaaaattctaagatggtatcaaagtctat 42968150  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 24745811 - 24745752
Alignment:
Q  276 tcaccttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggt 336  Q
    ||||||||||||  |||||||||||||| ||||| |||||||||| ||||| |||||||||    
T  24745811 tcaccttacaagccggttttgaaagggttgagttcggctcaaccc-aaattctaagatggt 24745752  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 7252240 - 7252298
Alignment:
Q  280 cttacaagttggttttgaaagggtcgagttaggctcaacccaaaattttaagatggtatca 340  Q
    ||||||||||||||||| | |||| |||||||||||||||| ||||| |||||||||||||    
T  7252240 cttacaagttggttttgta-gggttgagttaggctcaaccc-aaattctaagatggtatca 7252298  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 21374085 - 21374128
Alignment:
Q  305 gagttaggctcaacccaaaattttaagatggtatcaaagcctat 348  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||    
T  21374085 gagttaggctcaatccaaaattctaagatggtatcatagcctat 21374128  T

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