View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14205_low_2 (Length: 338)
Name: NF14205_low_2
Description: NF14205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14205_low_2 |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 6376478 - 6376157
Alignment:
| Q |
1 |
caaaacaaaatctcttgatattcattccctgtcaaaatcattttctccattcttcatcttcttcaaaatcattttctcctataattttctggagtaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6376478 |
caaaacaaaatctcttgatattcattccctgtcaaaatcattttctccattcttcatcttcttcaaaatcattttctcctataattttctggagtaaaac |
6376379 |
T |
|
| Q |
101 |
agattcaagcacaaattcatgtcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcacgcaacactaatcacctaatgtcaatctcacaacc |
200 |
Q |
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| T |
6376378 |
atattcaagcacaaattcatgtcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcacacaacactaatcacctaatgtcaatctcacaacc |
6376279 |
T |
|
| Q |
201 |
gtttcaactatgtttcacctctcttcactctactcattccaaaaccacaagtgtttttgttggtgtgtgggttattttt-cagatctgaaagatggtgat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6376278 |
gtttcaactatgtttcacctctcttcactctactcattccaaaaccacaagtgttgttgttggtgtgtgggttatttttccagatctgaaagatggtgat |
6376179 |
T |
|
| Q |
300 |
gtgtggttgtgtaggcgagagt |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
6376178 |
gtgtggttgtgtaggcgagagt |
6376157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 10571 - 10872
Alignment:
| Q |
22 |
tcattccctgtcaaaatcattttctccattcttcatcttcttcaaaatcattttctcctataattttctggagtaaaacagattcaagcacaaattcatg |
121 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
10571 |
tcattcactttcaaaatcattttctccattcttcatcttcttcaaaatcattttctcctataattttgtggagtaaaaaggattcaagcacaaattcatg |
10670 |
T |
|
| Q |
122 |
tcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcacgcaacactaatcacctaatgtcaatctcacaaccgtttcaactatgtttcacctc |
221 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||| ||| |||||||||||||||| |
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| T |
10671 |
tcaaacaggttcaaacaaaaatcatagttcacaaccttcaatcacacaacacaaatcacatcatgtcaatctcacaaccttttaaactatgtttcacctc |
10770 |
T |
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| Q |
222 |
tcttcactctactcattccaaaaccacaagtgtttttgttggtgtgtgggttattttt-cagatctgaaagatggt-gatgtgtggttgtgtaggcgaga |
319 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
10771 |
tcttcactctactcgttccaaaaccacaagtgtttttgttggtgtgtgggttatttttccagatctgaaagatggtggatgtgtggtttggtaggcgaga |
10870 |
T |
|
| Q |
320 |
gt |
321 |
Q |
| |
|
|| |
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|
| T |
10871 |
gt |
10872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 41490173 - 41489871
Alignment:
| Q |
22 |
tcattccctgtcaaaatcattttctccattcttcatcttcttcaaaatcattttctcctataattttctggagtaaaacagattcaagcacaaattcatg |
121 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
41490173 |
tcattcactttcaaaatcattttctccattcttcatcttcttcaaaattattttctcctataattttgtggagtaaaacggattcaagcacaaattcatg |
41490074 |
T |
|
| Q |
122 |
tcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcacgcaacactaatcacctaatgtcaatctcacaaccgtttcaactatgtttcacctc |
221 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||| ||||||| |||||||| |
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| T |
41490073 |
tcaaacaggttcaaacaaaaatcatagttcacaaccttcaatcacacaacactaatcacatcatgttaatctcacaaccttttaaactatggttcacctc |
41489974 |
T |
|
| Q |
222 |
tcttcactctactcattccaaaaccacaagtgtttttgttggtgtgtgggttattttt--cagatctgaaagatggt-gatgtgtggttgtgtaggcgag |
318 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |
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| T |
41489973 |
tcttcaccctactcattccaaaaccacaagtgtttttgttggtgtgtgggttattttttccagatctgaaagatggtggatgtgtggttgggtaggcgag |
41489874 |
T |
|
| Q |
319 |
agt |
321 |
Q |
| |
|
||| |
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|
| T |
41489873 |
agt |
41489871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 44212490 - 44212428
Alignment:
| Q |
187 |
tcaatctcacaaccgtttcaactatgtttcacctctcttcactctactcattccaaaaccaca |
249 |
Q |
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| T |
44212490 |
tcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccaca |
44212428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 44212581 - 44212525
Alignment:
| Q |
110 |
cacaaattcatgtcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcac |
166 |
Q |
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||||||||||||| ||| | |||||||| |||||||| |||||||||||||||||| |
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|
| T |
44212581 |
cacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcac |
44212525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 3933793 - 3933855
Alignment:
| Q |
187 |
tcaatctcacaaccgtttcaactatgtttcacctctcttcactctactcattccaaaaccaca |
249 |
Q |
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| T |
3933793 |
tcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccaca |
3933855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 3933694 - 3933756
Alignment:
| Q |
187 |
tcaatctcacaaccgtttcaactatgtttcacctctcttcactctactcattccaaaaccaca |
249 |
Q |
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|||||| || |||| | |||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
3933694 |
tcaatcccataaccttctcaactctgtttcacctctcttcactcacctcattccaaaaccaca |
3933756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 3933603 - 3933659
Alignment:
| Q |
110 |
cacaaattcatgtcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcac |
166 |
Q |
| |
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||||||||||||| ||| | |||||||| |||||||| |||||||||||||||||| |
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|
| T |
3933603 |
cacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcac |
3933659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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