View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_high_10 (Length: 459)
Name: NF14206_high_10
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 19493944 - 19493512
Alignment:
| Q |
18 |
ggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19493944 |
ggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttttgtacttaaacaaagacttcacaattagcccaaattccaccgttccatc |
19493845 |
T |
|
| Q |
118 |
tttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatcacactctcactctttccatcggtg |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19493844 |
tttgcggctccgagcaataccagtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatcacactctcactctttccatcggtg |
19493745 |
T |
|
| Q |
218 |
gtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacacgggaatacgatttta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19493744 |
gtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacacgggaatacgatttga |
19493645 |
T |
|
| Q |
318 |
agttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgacatcaaaggatgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19493644 |
agttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgacatcgaaggatgg |
19493545 |
T |
|
| Q |
418 |
agaatcgggaacaacgtccattgatagaataat |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
19493544 |
agaatcgggaacaacgtccattgatagaataat |
19493512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 405
Target Start/End: Complemental strand, 19530854 - 19530498
Alignment:
| Q |
49 |
ggactgagcccacctgtttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcg |
148 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| |||||| |||||||| || ||| |||||| |||||||||| ||||||| |||| || | |
|
|
| T |
19530854 |
ggactgatcccacctgttcttgtacttaaacaaagctgacacaatcagcccaaactccaccattccatttttgcggctctgagcaatggcggtggccaca |
19530755 |
T |
|
| Q |
149 |
ccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatcacactctcactctttccatcggtggtgaaagatggaagagatgatttggttagaa |
248 |
Q |
| |
|
|| ||||||||||||||||| || || | || |||| | ||||| || |||| | || |||||||||||||| ||||||| |||| |||||| |
|
|
| T |
19530754 |
cctccgaaatcatcagacttgttaaccaatagtgtcatcttcatcacgctagtgctctggctatgcgtggtgaaagatggcagagatgttttgcttagaa |
19530655 |
T |
|
| Q |
249 |
cgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacacgggaatacgattttaagttatatccggagaccgaaatgttaaactc |
348 |
Q |
| |
|
| | ||||||||||| |||||||| ||||||||||||| | |||||||| ||| ||||| | | |||||| | |||||||||||||| | ||| |
|
|
| T |
19530654 |
ccagaccttcacctccgtaaaagacctccgcagagacagcctcgtaataggcacaagaatagtctgtggggttataggccgagaccgaaatgttgagctc |
19530555 |
T |
|
| Q |
349 |
ggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgac |
405 |
Q |
| |
|
||||| || ||||| |||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
19530554 |
ggctgagaattgggggccgttaacagttagtgagttgagtgaacccacggagtcgac |
19530498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 95 - 364
Target Start/End: Original strand, 19517456 - 19517719
Alignment:
| Q |
95 |
agcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatca |
194 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||||| | || || |||||||| |||||| || ||| ||||| || | ||||| |||||||| |
|
|
| T |
19517456 |
agcccaaactccaccgttccatctttgcggctctgagcaatgctggctgcggcgccaccaaaatcaataggcttgttcaccgacaacgtcatatgaatca |
19517555 |
T |
|
| Q |
195 |
cactctcactctttccatcggtggtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgta |
294 |
Q |
| |
|
||||| |||| || |||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||||||| |||||||| | ||||| |
|
|
| T |
19517556 |
cactc-----ctttt-atgggtggtgaaagatgacagagatgatttggttagaacaagaccttcacctcggtaaaagatctcagcagagactgcgtcgta |
19517649 |
T |
|
| Q |
295 |
atacacacgggaatacgattttaagttatatccggagaccgaaatgttaaactcggctgtgagttgggtg |
364 |
Q |
| |
|
|| |||||||||||| | | ||||| | ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
19517650 |
gtaaacacgggaatactctgtggggttatcggcagagaccgtaatgttgaactcggctgtgagttgggtg |
19517719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 111 - 396
Target Start/End: Complemental strand, 19501873 - 19501594
Alignment:
| Q |
111 |
ttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatcacactctcactctttcc |
210 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| ||||| || |||||| || ||| ||||| || | ||||| ||||||||| |||| || | |
|
|
| T |
19501873 |
ttccatctttgcggctctgagcaatgctggtcgccgcgccgccaaaatcagaaggcttgttcaccgacaacgtcatatgaatcacgctct------tttc |
19501780 |
T |
|
| Q |
211 |
atcggtggtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacacgggaatac |
310 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| | || |||||||| ||||| ||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
19501779 |
gtgggtggtgaaagatagaagagatgatttggttagaacaagactttcacctccataaaatatctcagcagagacagcgtcgtaataaacacgggaatac |
19501680 |
T |
|
| Q |
311 |
gattttaagttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctc |
396 |
Q |
| |
|
| | |||| | ||||| | |||||| ||||||||||||||||||||| | | | ||||||||||||||||||||||| |
|
|
| T |
19501679 |
tgtgtgggattatcgacagagacggtaatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttgagtgaaccctc |
19501594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 74 - 303
Target Start/End: Complemental strand, 19495842 - 19495613
Alignment:
| Q |
74 |
ttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattca |
173 |
Q |
| |
|
|||||||||| ||||| || ||||||||| | |||| ||||||||||| |||| |||| ||| ||||| || | || || ||||| ||| || |||| | |
|
|
| T |
19495842 |
ttaaacaaagccttcaaaactagcccaaactttacctttccatctttgtggcttcgagaaatgccggtggccacaccgccaaaatcttcaaacctattaa |
19495743 |
T |
|
| Q |
174 |
cggaaagcgtcaaatgaatcacactctcactctttccatcggtggtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagat |
273 |
Q |
| |
|
| | || |||| |||||||| || | ||||||| || ||||||||||||||| ||||||| |||| ||||||| | |||||||||||||||||||| |
|
|
| T |
19495742 |
ccggtagtgtcatctgaatcacgctggcgctctttctattggtggtgaaagatggcagagatgttttgtttagaaccagaccttcacctctgtaaaagac |
19495643 |
T |
|
| Q |
274 |
ctccgcagagacatcatcgtaatacacacg |
303 |
Q |
| |
|
|||| |||||| | |||||||| ||||| |
|
|
| T |
19495642 |
ctccatagagactgcgtcgtaatagacacg |
19495613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 19523816 - 19523730
Alignment:
| Q |
49 |
ggactgagcccacctgtttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatctttgcggctccgagcaat |
135 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | |||||| |||||||| || ||| |||||| |||||||||| ||||||| |
|
|
| T |
19523816 |
ggactgagcccacctgttcttgtacttaaacaaagccgacacaatcagcccaaactccaccattccatttttgcggctcagagcaat |
19523730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 19125163 - 19125539
Alignment:
| Q |
18 |
ggttgcaaacaaccttcataggcctccagtcggactgagcccacctgtttttgtacttaaacaaagacttcacaattagcccaaattctaccgttccatc |
117 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||| | ||||| |||||||||||||||| |||||| |||||||| || ||| ||||||| |
|
|
| T |
19125163 |
ggttgcaaacaaccttcaaagatgtccagtcggaatgagaaaatctgttcttgtacttaaacaaagttgacacaatcagcccaaactccacccttccatc |
19125262 |
T |
|
| Q |
118 |
tttgcggctccgagcaataccggtcgcagcgccaccgaaatcatcagacttattcacggaaagcgtcaaatgaatcacactctcactctttccatcggtg |
217 |
Q |
| |
|
|||||| ||| |||||| || | || | || || ||||| ||||| | || || || | |||| | ||||| || ||||||| | || |||| |
|
|
| T |
19125263 |
tttgcgcctcagagcaacgtcgctggctacaccgccaaaatcctcagatatgttaaccgatggtgtcatcttcatcacgctagcactcttgctatgggtg |
19125362 |
T |
|
| Q |
218 |
gtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacacgggaatacgatttta |
317 |
Q |
| |
|
||||||||||| || |||| | || ||| ||| | ||||||||||| |||||||| || |||||||| | | |||||| |||| ||||| | ||| |
|
|
| T |
19125363 |
gtgaaagatggcagtgatgttctgtttaaaaccagaccttcacctccgtaaaagagatctgcagagactgccttgtaataggcacgagaataggttttgt |
19125462 |
T |
|
| Q |
318 |
agttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccc |
394 |
Q |
| |
|
|||||| || |||| ||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
19125463 |
ggttataggcgaagactgaaatgtcgaactcagctgtgatttgggtgccgttaacagttagtgagttgagtgcaccc |
19125539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 394
Target Start/End: Complemental strand, 46536743 - 46536552
Alignment:
| Q |
203 |
ctctttccatcggtggtgaaagatggaagagatgatttggttagaacgacaccttcacctctgtaaaagatctccgcagagacatcatcgtaatacacac |
302 |
Q |
| |
|
||||||| || ||||||||||||||| || ||||||| |||| |||| | ||||||||| |||||| | ||| ||||||| | | |||||| |||| |
|
|
| T |
46536743 |
ctctttctatgggtggtgaaagatggccgacatgatttctttaggacgagagcttcacctcggtaaaaaacctcaacagagaccgcgttgtaatagacac |
46536644 |
T |
|
| Q |
303 |
gggaatacgattttaagttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccc |
394 |
Q |
| |
|
| ||| || || | ||||| | | ||||||||||| || |||| |||||||| |||||||||||| || || |||||||||||||||||| |
|
|
| T |
46536643 |
gagaaaaccatgtagggttatttaccgagaccgaaatattgaacttggctgtgacttgggtgccgttaactgtaagtgagttgagtgaaccc |
46536552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University