View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_14 (Length: 425)
Name: NF14206_high_14
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 19890038 - 19889630
Alignment:
| Q |
1 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatactttgttttgtcttcaacttcataccaatcaca |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19890038 |
gagaggccaacacaaaaggatcaactttataacatcttttattaaactggacacaagtcatcccatacttttttttgtcttcaacttcataccaatcaca |
19889939 |
T |
|
| Q |
101 |
tctaaataacaccaacttttcacaacaatctacctcaattatatctataattgatccgtaataagttaatggttttgttatcggattttcatctttcgtg |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19889938 |
tctaaataacaccaactttccacaacaatctacctcaattatatctataatcgatccataataagttaatggttttgttatcggattttcatctttcgtg |
19889839 |
T |
|
| Q |
201 |
cttgcaaagctttgggtcatcgacaccaatgtaacgccactattttgtgttttccttcttgcatcacgttgtttagtatgaaacctataaccattaataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
19889838 |
cttgcaaagctttgggtcatcgacaccaatgtaacgccactattttgtgttttccttctggcatcacgttttttagtatgaaacctataaccattaataa |
19889739 |
T |
|
| Q |
301 |
caaaacctgaaaatctcctagcaacgacatttggtcctcttgacaactctttaagttcatcagttacatcatccatccaagtacgaattttgaaccattc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19889738 |
caaaacctgaaaatctcctagcaacgacatttggtcctcttgacaactctttaagttcatcagatacatcatccatccaagtacgaattttgaaccattc |
19889639 |
T |
|
| Q |
401 |
aatgaaatc |
409 |
Q |
| |
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||||||||| |
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| T |
19889638 |
aatgaaatc |
19889630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 24242095 - 24241828
Alignment:
| Q |
1 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaactggacacaagtcatcccatactttgtttt-gtcttcaacttcataccaatcac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
24242095 |
gagaggccaacacaaaaggatcatctttataacatcttttattaaattggacacaagtcgtcccatactttttttttgtcttcaacttcataccaatcac |
24241996 |
T |
|
| Q |
100 |
atctaaataacaccaacttttcacaacaatctacctcaattatatctataattgatccgtaataagttaatggttttgttatcggattttcatctttcgt |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24241995 |
atctaaataacaccaactttccacaacaatctacctcaattatatctataatcgatccataataagttaatggttttgttatcggattttcatctttcgt |
24241896 |
T |
|
| Q |
200 |
gcttgcaaagctttgggtcatcgacaccaatgtaacgccactattttgtgttttccttcttgcatcac |
267 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
24241895 |
gcttgcaaagctttgggtcatcgacaccaatgtaacgccactatttcgtgttttccttcttgcatcac |
24241828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 23492328 - 23492399
Alignment:
| Q |
242 |
attttgtgttttccttcttgcatcacgttgtttagtatgaaacctataaccattaataacaaaacctgaaaa |
313 |
Q |
| |
|
|||||| ||||| | |||||||||||||| |||| ||||| ||||||||||| |||||| |||||||||| |
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|
| T |
23492328 |
attttgagtttttcgtcttgcatcacgtttcatagtgtgaaatctataaccattgataacataacctgaaaa |
23492399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 19310236 - 19310196
Alignment:
| Q |
78 |
tcttcaacttcataccaatcacatctaaataacaccaactt |
118 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
19310236 |
tcttcagcttcaaaccaatcacatctaaataacacaaactt |
19310196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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