View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_high_15 (Length: 424)
Name: NF14206_high_15
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 230 - 414
Target Start/End: Complemental strand, 15592148 - 15591964
Alignment:
| Q |
230 |
aatgcatctggattacttacgatacaagttaatccattgattagaattttattttaatagatatcattgaattcgcattagttagattgattagtgttat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15592148 |
aatgcatctggattacttacgatacaagttaatccattgattagaattttattttaatagatatcattgaattcgcattagttagattgattagtgttat |
15592049 |
T |
|
| Q |
330 |
tattgaatgatattatgtatgataatatgggtaacccttattcgtgttatgttatgttgttctattgaataccttgcctcctttg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15592048 |
tattgaatgatattatgtatgataatatgggtaacccttatttgtgttatgttatgttgttctattgaataccttgcctcctttg |
15591964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 15592544 - 15592351
Alignment:
| Q |
19 |
agttatgtcgcaattaatt-agttgtttaattttttgtgtatggcgaagtattcatcattttgtggtaattcttagctttctagaactagctttagttat |
117 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15592544 |
agttatatcgcaattaatttagttgtttaattttttgtgtatcgcgaagtattcatcattttgtggtaattcttaggtttctagaactagcttttgttat |
15592445 |
T |
|
| Q |
118 |
atgccacttgaactcgaatattaagtaatgcaatatggaaattaaaccttgcaggaaatcttgattatatcccacatgagggcactggaaaattt |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||| |||||||| |
|
|
| T |
15592444 |
attccacttgaactcgaatattaagtaatgcaatatggaaattaaaccttgcagggaatcttgattatatcccaaagga-ggcactagaaaattt |
15592351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 15587695 - 15587533
Alignment:
| Q |
49 |
tttttgtgtatggcgaagtattcatcattttgtggtaattcttagctttctagaactagctttagttatatgccacttgaactcgaatattaagtaatgc |
148 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15587695 |
tttttgtgtacggcgatgtattcatcattttgtggtaattcttaggtttctagaactagctttagttatataccacttgaactcgaatattaagtaatag |
15587596 |
T |
|
| Q |
149 |
aatatggaaattaaaccttgcaggaaatcttgattatatcccacatgagggcactggaaaattt |
212 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||||| || |||||| |||||||| |
|
|
| T |
15587595 |
aatattgaaattaaaccttgcagggaaacttgattatatcccacagga-ggcactagaaaattt |
15587533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 15637599 - 15637546
Alignment:
| Q |
39 |
gttgtttaattttttgtgtatggcgaagtattcatcattttgtggtaattctta |
92 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
15637599 |
gttgtttaattttttgtgcaaggcgatgtattcatcattttgtggtaattctta |
15637546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 15637548 - 15637493
Alignment:
| Q |
138 |
ttaagtaatgcaatatggaaattaaaccttgcaggaaatcttgattatatcccaca |
193 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
15637548 |
ttaagtaatagaatatggaaattaaaccttgcagggaaacttgattatatcccaca |
15637493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University