View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_high_18 (Length: 368)
Name: NF14206_high_18
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 43865509 - 43865179
Alignment:
| Q |
16 |
tcactaccgctattattctcagcaaaagactttccatcataaacatcaaaatctgtatttgcacattctgcattaccaaatagatcaaagttttgagttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43865509 |
tcactaccgctattattctcagcaaaagactttccatcataaacatcaaaatctgtatttgcacattctgcattaccaaatagatcaaagttttgagttt |
43865410 |
T |
|
| Q |
116 |
ggaccccaaaaacttgattggaggatgatgatccatgcatatgatgaaactgatcaatatgctgaaaatcttgtaagaaattaccatgacaggagtgagc |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43865409 |
ggtccccaaaaacttgattggaggatgatgatccatgcatatgatgaaactgctcaatatgctgaaaatcttgtaagaaattaccatgacaggagtgagc |
43865310 |
T |
|
| Q |
216 |
actaaatggaattagctcatctttctgccttggtttcaggtagttttcttgcaaatgcattgattgtgattgtgagggatagttttctctgagatttgtg |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43865309 |
actaaatggatttagctcatctttctgccttggtttcaggtagttttcttgcaaatgcattgattgtgattgtgagggatagttttctctgagatttgtg |
43865210 |
T |
|
| Q |
316 |
tcgaaaaccatgacagaattaggtgtaacag |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43865209 |
tcgaaaaccatgacagaattaggtgtaacag |
43865179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University