View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_23 (Length: 320)
Name: NF14206_high_23
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_23 |
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| [»] chr4 (10 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 18361485 - 18361173
Alignment:
| Q |
2 |
agaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttatagattcctcaacctgtttagtaata |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18361485 |
agaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttatagattcctcaacctgtttagtaata |
18361389 |
T |
|
| Q |
102 |
ataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacacactcagctcccttatggttttcaaa |
201 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18361388 |
a---ccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgag-aaaaaaaaattaacacactcagctcccttatggttttcaaa |
18361293 |
T |
|
| Q |
202 |
taactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtg-annnnnnngcaagaagtcaactattccatcagg |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
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| T |
18361292 |
taactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaatttttttgcaagaagtcaactattccatcagg |
18361193 |
T |
|
| Q |
301 |
tatgggaggtggtttgaaac |
320 |
Q |
| |
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|||||||| |||||| |||| |
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| T |
18361192 |
tatgggagatggtttcaaac |
18361173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 36601442 - 36601756
Alignment:
| Q |
2 |
agaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataataattgataatatttgcaccctttatagattcctcaacctgtttagtaata |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601442 |
agaggcaggcgcagcggtagaagcaagtgcggagaactgcgaaagataat---tgataatatttgcaccctttatagattcctcaacctgtttagtaat- |
36601537 |
T |
|
| Q |
102 |
ataaccaatcacaaattcttatggtcgtttcattaaattagctaagctgagattcgagnnnnnnnnnnttaacacactcagctcccttatggttttcaaa |
201 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
36601538 |
--aaccaatcacaaattcttatggttgtttcattaaattagctaagctgagattcgagaaaaaaaaattaaacacactcagctcccttatggttttcaaa |
36601635 |
T |
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| Q |
202 |
taactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtga--nnnnnnngcaagaagtcaactattccatcag |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
36601636 |
taactacttgcttaagattaaatcaattcgaataatctgttaagatgttaactttggccgtcggtgaattttttttgcaagaagtcaactattccatcag |
36601735 |
T |
|
| Q |
300 |
gtatgggaggtggtttgaaac |
320 |
Q |
| |
|
||||||||| |||||| |||| |
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| T |
36601736 |
gtatgggagatggtttcaaac |
36601756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 36642382 - 36642523
Alignment:
| Q |
174 |
cacactcagctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtga-nnnn |
272 |
Q |
| |
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|||||||||||||||||||| ||| ||||||| || |||||||||||||| |||| ||| |||||||| |||||||||||||| || | |||||| |
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| T |
36642382 |
cacactcagctcccttatggattttaaataacaacctgcttaagattaaaacaatccgagtaatctgtaaagatgttaacttccgcagacggtgagtttt |
36642481 |
T |
|
| Q |
273 |
nnngcaagaagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
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|||||||||| |||||||||| |||||||| |||||||| |
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| T |
36642482 |
gtcgcaagaagtctactattccattaggtatggcaggtggtt |
36642523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 35969610 - 35969477
Alignment:
| Q |
182 |
gctcccttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtga-nnnnnnngcaag |
280 |
Q |
| |
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|||| |||||||||||||||||||||| | |||||||||||| ||||| || ||| ||||| |||||||||||| ||| |||||| ||||| |
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| T |
35969610 |
gctcacttatggttttcaaataactacctccttaagattaaaacaatttgagtaaattgttaggatgttaacttccgccagcggtgagttttgtcgcaag |
35969511 |
T |
|
| Q |
281 |
aagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||| |
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| T |
35969510 |
aaatcaactattccatctggtatgggaggaggtt |
35969477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 18365412 - 18365378
Alignment:
| Q |
280 |
gaagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
18365412 |
gaagtcaactattccatcaggtatgggaggtggtt |
18365378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 314
Target Start/End: Original strand, 36597512 - 36597546
Alignment:
| Q |
280 |
gaagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
36597512 |
gaagtcaactattccatcaggtatgggaggtggtt |
36597546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 36635825 - 36635863
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
36635825 |
gcaagaattcaactattccatcaggtatgggaggtggtt |
36635863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 36910861 - 36910716
Alignment:
| Q |
170 |
ttaacacactcagctcccttatggttttcaaataacta----cttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcgg |
265 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| | |||||||||||||| || | | ||||||||| |||||||||||| || | || |
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| T |
36910861 |
ttaacacactcagctcccatatggtttttaaataactagctacctgcttaagattaaaataaataaagtaatctgttgtgatgttaacttccgctgaggg |
36910762 |
T |
|
| Q |
266 |
tgannnnnnn-gcaagaagtcaactattccatcaggtatgggaggt |
310 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||| |
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| T |
36910761 |
cgagttttgtcgcaagaagtcaactattccatcaggtatggcaggt |
36910716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 36630511 - 36630477
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
36630511 |
gcaagaagtcaactattccatcaggtatggcaggt |
36630477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 36630742 - 36630696
Alignment:
| Q |
54 |
ttgataatatttgcaccctttatagattcctcaacctgtttagtaat |
100 |
Q |
| |
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|||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
36630742 |
ttgataatcttctcaccctttatagattcttcaacctgtttagtaat |
36630696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 35336957 - 35336920
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggtggt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
35336957 |
gcaagaagtcaactattccatcaggtatgggaggtggt |
35336920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 42601686 - 42601820
Alignment:
| Q |
187 |
cttatggttttcaaataactacttgcttaagattaaaccaattcgaataatctgttaagatgttaacttcggccgtcggtga-nnnnnnngcaagaagtc |
285 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||| || ||| |||||||||||||| |||||||| ||| ||| | ||||||| || |
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| T |
42601686 |
cttatggtttttaaataactacctgcttaagatcaaaagaactcgggtaatctgttaagattttaacttccaccgacggcaagttttgtcgcaagaaatc |
42601785 |
T |
|
| Q |
286 |
aactattccatcaggtatgggaggtggtttgaaac |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| |
|
|
| T |
42601786 |
aactattccatcgggtatgggaggtggttttaaac |
42601820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 19657227 - 19657271
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggtggtttgaaac |
320 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19657227 |
gcaagaaggcaactattccatctggtatgggaggtggtttcaaac |
19657271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 19674071 - 19674115
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggtggtttgaaac |
320 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19674071 |
gcaagaaggcaactattccatctggtatgggaggtggtttcaaac |
19674115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 33839176 - 33839214
Alignment:
| Q |
276 |
gcaagaagtcaactattccatcaggtatgggaggtggtt |
314 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
33839176 |
gcaagaagtccactattccatcaggtatggaaggtggtt |
33839214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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