View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_high_27 (Length: 306)
Name: NF14206_high_27
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 28833887 - 28834176
Alignment:
| Q |
1 |
agtatatattatatgagtgagggcaggcaaccggtacagacatagaaaccaaagcataattattcatgcacggcaaataggtatgatannnnnnnattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28833887 |
agtatatattatatgagtgagggcaggcaacccgtacagacatagaaaccaaggcataattattcatgcacggcaaataggtatgatatttttttattgt |
28833986 |
T |
|
| Q |
101 |
tctcgatattccctatagcttaatgtgacttaaattttggccctataaaagagcaagaggacattattttggttgtattattatgaacaatagaaatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28833987 |
tctcgatattccctatagcttaatgtgacttaaattttgaccctataaaagagcaaggggacattattttggttgtattattatgaacaatagaaatgaa |
28834086 |
T |
|
| Q |
201 |
tgggacgtgatcatgaagtaacatgaattatcacatcttggcagagaaaaagaaaattacaagttattgcatatggaggggtatcttttt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28834087 |
tgggacgtgatcatgaagtaacatgaattatcacatcttggcagagaaaaagaaaattattagttattgcatatggaggggtatcttttt |
28834176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University