View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14206_high_31 (Length: 280)

Name: NF14206_high_31
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14206_high_31
NF14206_high_31
[»] chr2 (9 HSPs)
chr2 (1-273)||(13135599-13135871)
chr2 (13-163)||(8078821-8078969)
chr2 (197-266)||(26063010-26063079)
chr2 (197-266)||(26068749-26068818)
chr2 (83-147)||(31266908-31266972)
chr2 (16-66)||(16594095-16594145)
chr2 (104-182)||(29829789-29829867)
chr2 (59-143)||(36658475-36658561)
chr2 (90-176)||(42236656-42236742)
[»] scaffold0002 (1 HSPs)
scaffold0002 (37-176)||(346986-347126)
[»] chr5 (5 HSPs)
chr5 (37-176)||(35247426-35247566)
chr5 (10-132)||(1954017-1954139)
chr5 (34-235)||(15195712-15195915)
chr5 (54-137)||(26107727-26107810)
chr5 (83-147)||(32538023-32538087)
[»] chr4 (5 HSPs)
chr4 (10-132)||(53591846-53591969)
chr4 (59-143)||(48665899-48665984)
chr4 (84-255)||(12583110-12583281)
chr4 (210-273)||(53591706-53591769)
chr4 (83-143)||(45892670-45892730)
[»] chr3 (3 HSPs)
chr3 (10-177)||(23779890-23780058)
chr3 (10-77)||(4858468-4858536)
chr3 (30-76)||(49492824-49492870)
[»] chr1 (2 HSPs)
chr1 (177-272)||(8210061-8210155)
chr1 (45-127)||(27308983-27309065)
[»] chr6 (1 HSPs)
chr6 (54-143)||(23661364-23661454)
[»] scaffold0056 (1 HSPs)
scaffold0056 (114-176)||(60525-60587)
[»] scaffold0527 (2 HSPs)
scaffold0527 (210-255)||(3216-3261)
scaffold0527 (210-255)||(11279-11324)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 13135871 - 13135599
Alignment:
Q  1 tctggttcttggttctgttcatttgtgtgttgtttcgttggatgcatcccacgatctggattcaacaagacttgttttgccggatgttgctcgaaaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  13135871 tctggttcttggttctgttcatttgtgtgttgtttcgttggatgcatcccacgatctggattcaacaagacttgttttgccggatgttgttcgaaagagc 13135772  T
Q  101 tatgtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgctttttgcaccgtcgatgaattatgat 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13135771 tatgtgcgtagaagctccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcgattgctttttgcaccgtcgatgaattatgat 13135672  T
Q  201 gaattttaatcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgtgactctgtgctc 273  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13135671 gaattttagtcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgcgactctgtgctc 13135599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 8078969 - 8078821
Alignment:
Q  13 ttctgttcatttgtgtgttgtttcgttggatgcatcccacgatctggattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgcgtaga 112  Q
    |||| ||||| | |||||||||| ||| |||||||||  |||| |||||||| ||||||||| |||  |  |||||| || ||||||||||||  |||||    
T  8078969 ttctattcatatatgtgttgttttgttagatgcatccttcgatttggattcagcaagacttgatttatctcatgttgttcaaaaaagctatgt--gtaga 8078872  T
Q  113 aactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatcc 163  Q
      ||||||||||| | |||||||||||| | |||| |||| |||| |||||    
T  8078871 tgctccgtgttgatgatagtagtcgttcgttgtaccttaaggactatatcc 8078821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 26063079 - 26063010
Alignment:
Q  197 tgatgaattttaatcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgtgactc 266  Q
    |||||||||||  ||||||||||||||| |||| |||||||||| ||||||||||| |||| || |||||    
T  26063079 tgatgaatttttgtcgtttgttcatcccacgatctggactacgactgaagtttcaaaacttgtgcgactc 26063010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 26068818 - 26068749
Alignment:
Q  197 tgatgaattttaatcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgtgactc 266  Q
    |||||||||||  ||||||||||||||| |||| |||||||||| ||||||||||| |||| || |||||    
T  26068818 tgatgaatttttgtcgtttgttcatcccacgatctggactacgactgaagtttcaaaacttgtgcgactc 26068749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 31266908 - 31266972
Alignment:
Q  83 gatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtac 147  Q
    ||||||| ||||||  |||| |||||||||  |||||||||||  ||||||||||||||||||||    
T  31266908 gatgttgttcgaaagggctaggtgcgtagatgctccgtgttgatagtagtagtcgttcatcgtac 31266972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 16594095 - 16594145
Alignment:
Q  16 tgttcatttgtgtgttgtttcgttggatgcatcccacgatctggattcaac 66  Q
    |||||||  |||||||| || ||||||||||||||| ||||||||||||||    
T  16594095 tgttcatcggtgtgttgatttgttggatgcatcccatgatctggattcaac 16594145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 29829789 - 29829867
Alignment:
Q  104 gtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgctttttgca 182  Q
    |||||||||  |||| ||||||||||||| || ||| ||||||| |||| ||| ||||| |||||||||| || |||||    
T  29829789 gtgcgtagacgctccatgttgacggtagttgttgtttatcgtaccttaaggacattatctgttgcggttgtttcttgca 29829867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 36658475 - 36658561
Alignment:
Q  59 gattcaacaagacttgttttg-ccggatgttgctcgaaaaagctatgtgcgtagaaactccgt-gttgacggtagtagtcgttcatc 143  Q
    ||||||||| |||| |||||  || |||||||||||||| ||||| |||||||||  ||| || ||||| |||||||||||||||||    
T  36658475 gattcaacatgactggttttatcctgatgttgctcgaaacagctaggtgcgtagatgctctgtggttgatggtagtagtcgttcatc 36658561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 42236742 - 42236656
Alignment:
Q  90 ctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgctt 176  Q
    ||||||| ||||| |||||||||  |||| ||||||||||||| ||||||| |||||| ||||  | | |||| | |||||||||||    
T  42236742 ctcgaaagagctaggtgcgtagatgctccatgttgacggtagtcgtcgttcgtcgtaccttaagaattgtatctgatgcggttgctt 42236656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 347126 - 346986
Alignment:
Q  37 gttggatgcatcccacgatctggattcaacaagacttgt-tttgccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagt 135  Q
    ||||||||||||||| ||| |||||||||| || ||||| |||||| || ||||||||||| ||||| |||||||||  ||| |||||||||||||| ||    
T  347126 gttggatgcatcccatgatatggattcaacgagtcttgtgtttgcctgaggttgctcgaaagagctaggtgcgtagatgctctgtgttgacggtagttgt 347027  T
Q  136 cgttcatcgtacattaatgactttatccgttgcggttgctt 176  Q
    ||||| || ||| ||||  ||| |||| | |||||||||||    
T  347026 cgttcgtcataccttaagaactgtatctgctgcggttgctt 346986  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 35247426 - 35247566
Alignment:
Q  37 gttggatgcatcccacgatctggattcaacaagacttgttttg-ccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagt 135  Q
    ||||||||||||||| |||||||||||||| || ||| | ||  || || ||||||||||| ||||| |||||||||  |||||||||||||||||| ||    
T  35247426 gttggatgcatcccatgatctggattcaacgagtcttatgttctcctgaggttgctcgaaagagctaggtgcgtagatgctccgtgttgacggtagttgt 35247525  T
Q  136 cgttcatcgtacattaatgactttatccgttgcggttgctt 176  Q
    ||||| |||||| ||||  ||| |||| | |||||||||||    
T  35247526 cgttcgtcgtaccttaagaactatatctgctgcggttgctt 35247566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 1954017 - 1954139
Alignment:
Q  10 tggttctgttcatttgtgtgttgtttcgttggatgc-atcccacgatctggattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgcg 108  Q
    |||||||||||||||||| | ||||  ||||||| | ||||| ||||||| ||||||||||||||||||  ||  |||||||||||||  |||| |||||    
T  1954017 tggttctgttcatttgtgcgatgttg-gttggataccatccctcgatctgcattcaacaagacttgtttctcctaatgttgctcgaaagggctaggtgcg 1954115  T
Q  109 tagaaactccgtgttgacggtagt 132  Q
    ||||  ||| ||||||||||||||    
T  1954116 tagacgctctgtgttgacggtagt 1954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 15195712 - 15195915
Alignment:
Q  34 ttcgttggatgcatcccacgatctggattcaacaagacttgttttgccg--gatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtag 131  Q
    ||||||||||||||||  |||||||||||||||||| |||  | | |    |||||| |||||||| |||| ||||||||   |||| ||||||||||||    
T  15195712 ttcgttggatgcatccatcgatctggattcaacaagtctttatgttcgtatgatgtttctcgaaaaggctaggtgcgtaggggctccatgttgacggtag 15195811  T
Q  132 tagtcgttcatcgtacattaatgactttatccgttgcggttgctttttgcaccgtcgatgaattatgatgaattttaatcgtttgttcatccctcgattt 231  Q
    | ||||||  |||| ||| ||  ||| |||| || | ||||||||  |||  |||||||| | |||| |||| ||  || |||||||||||||||||| |    
T  15195812 ttgtcgtttgtcgtgcatcaagaactgtatctgtcgtggttgcttcatgcgtcgtcgatggactatgttgaagttccattgtttgttcatccctcgatct 15195911  T
Q  232 ggac 235  Q
    ||||    
T  15195912 ggac 15195915  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 26107810 - 26107727
Alignment:
Q  54 atctggattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcg 137  Q
    ||||| ||||||||||||||| || ||| |||||||| ||||| ||||| ||| |||||  ||| ||| || ||||||||||||    
T  26107810 atctgaattcaacaagacttgattagcccgatgttgcacgaaagagctaggtgtgtagatgctctgtgctggcggtagtagtcg 26107727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 32538087 - 32538023
Alignment:
Q  83 gatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtac 147  Q
    ||||||||||||||  |||| |||| ||||  |||||||||||||||||  ||| ||||||||||    
T  32538087 gatgttgctcgaaagggctaggtgcatagatgctccgtgttgacggtaggggtcattcatcgtac 32538023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 53591969 - 53591846
Alignment:
Q  10 tggttctgttcatttgtgtgttgtttcgttggatgc-atcccacgatctggattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgcg 108  Q
    ||||||| |||||||||| | ||||| ||||||| | ||| | ||||||||||||||| |||||||||| ||| ||||||||||||||  |||| |||||    
T  53591969 tggttctattcatttgtgcgatgtttggttggataccatcactcgatctggattcaacgagacttgtttcgcctgatgttgctcgaaagggctaggtgcg 53591870  T
Q  109 tagaaactccgtgttgacggtagt 132  Q
    ||||  ||||||||||||| ||||    
T  53591869 tagacgctccgtgttgacgatagt 53591846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 48665899 - 48665984
Alignment:
Q  59 gattcaacaagacttgttttg-ccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatc 143  Q
    ||||||||| |||| |||||  || |||||||||| ||| ||||| |||||||||  |||||||||||||||||||||||||||||    
T  48665899 gattcaacatgactggttttatcctgatgttgctcaaaagagctaggtgcgtagatgctccgtgttgacggtagtagtcgttcatc 48665984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 255
Target Start/End: Complemental strand, 12583281 - 12583110
Alignment:
Q  84 atgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgctttttgcac 183  Q
    |||||||||||||  |||| ||| |||||  |||||||||||||||||||||| |||||| ||| | || || |||||||   | |||||||| |||||     
T  12583281 atgttgctcgaaagggctaggtgtgtagatgctccgtgttgacggtagtagtcattcatcatacctaaaagattttatccaccgtggttgcttcttgcat 12583182  T
Q  184 cgtcgatgaattatgatgaattttaatcgtttgttcatccctcgatttggactacgattgaagtttcaagac 255  Q
     || | || |  |||||  ||||   |||||||||||||| | |||||||||| ||| ||||||||||||||    
T  12583181 tgttggtggacaatgatagatttatgtcgtttgttcatccattgatttggactgcgactgaagtttcaagac 12583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 53591769 - 53591706
Alignment:
Q  210 tcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgtgactctgtgctc 273  Q
    |||||||||| ||||||||| || |||||||||||| ||||||||| | |||||||||||||||    
T  53591769 tcgtttgttcgtccctcgatctgaactacgattgaattttcaagacctttgtgactctgtgctc 53591706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 45892730 - 45892670
Alignment:
Q  83 gatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatc 143  Q
    |||||||||| |||  |||| |||| ||||  |||||||||||||||||||||||||||||    
T  45892730 gatgttgctcaaaagggctaggtgcctagatgctccgtgttgacggtagtagtcgttcatc 45892670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 23779890 - 23780058
Alignment:
Q  10 tggttctgttcatttgtgtgttgtttcgttggatgc-atcccacgatctg-gattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgc 107  Q
    |||||||||||||||||| | ||||| ||| ||| | ||||| ||||||  ||||||||||||||||||| ||| ||||||||||||||  | || ||||    
T  23779890 tggttctgttcatttgtgagatgtttggttagataccatccctcgatctaagattcaacaagacttgtttcgcctgatgttgctcgaaagggttaggtgc 23779989  T
Q  108 gtagaaactccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgcttt 177  Q
    |||||  |||||||||||||||||| || | |  |||||| || ||||||||||| | | ||||||||||    
T  23779990 gtagacgctccgtgttgacggtagttgttgat-gtcgtaccttcatgactttatctgctacggttgcttt 23780058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 4858536 - 4858468
Alignment:
Q  10 tggttctgttcatttgtgtgttgtttcgttggatgc-atcccacgatctggattcaacaagacttgttt 77  Q
    |||||||||||||||||| | ||||| ||||||| | ||||| ||||||||||||||||||||||||||    
T  4858536 tggttctgttcatttgtgcgatgtttggttggataccatccctcgatctggattcaacaagacttgttt 4858468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 49492824 - 49492870
Alignment:
Q  30 ttgtttcgttggatgcatcccacgatctggattcaacaagacttgtt 76  Q
    |||||| ||||||||||||||| |||||| |||||||| ||||||||    
T  49492824 ttgttttgttggatgcatcccatgatctgcattcaacatgacttgtt 49492870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 8210155 - 8210061
Alignment:
Q  177 tttgcaccgtcgatgaattatgatgaattttaatcgtttgttcatccctcgatttggactacgattgaagtttcaagacttatgtgactctgtgct 272  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |||| ||||| || | | ||||||||||||||||| ||||||    
T  8210155 tttgcgccgtcgatgaattgtgatgaattttagtcgtttgttcat-cctcgatctggattacgactggactatcaagacttatgtgactttgtgct 8210061  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 27309065 - 27308983
Alignment:
Q  45 catcccacgatctggattcaacaagacttgttttgccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacg 127  Q
    |||||| |||||||||||||||||||||| ||| |   |||||| ||||||| || || |||||| ||  |||||||||||||    
T  27309065 catccctcgatctggattcaacaagacttttttcgggtgatgttactcgaaagagttaggtgcgtcgacgctccgtgttgacg 27308983  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 23661364 - 23661454
Alignment:
Q  54 atctggattcaacaagacttgttttg-ccggatgttgctcgaaaaagctatgtgcgtagaaactccgtgttgacggtagtagtcgttcatc 143  Q
    |||| ||||||||| |||| |||||  || ||||||||||||||  |||| |||||||||  |||||||||||||||||||||||||||||    
T  23661364 atctcgattcaacatgactggttttatcctgatgttgctcgaaagggctaggtgcgtagatgctccgtgttgacggtagtagtcgttcatc 23661454  T

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Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 60587 - 60525
Alignment:
Q  114 actccgtgttgacggtagtagtcgttcatcgtacattaatgactttatccgttgcggttgctt 176  Q
    |||| |||||||||||||||||||||   ||||| |||| |||||||||||||| ||||||||    
T  60587 actctgtgttgacggtagtagtcgtttgacgtaccttaaggactttatccgttgtggttgctt 60525  T

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Target: scaffold0527 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 3261 - 3216
Alignment:
Q  210 tcgtttgttcatccctcgatttggactacgattgaagtttcaagac 255  Q
    |||||||||||||||| ||| |||||| ||| ||||||||||||||    
T  3261 tcgtttgttcatcccttgatctggactgcgactgaagtttcaagac 3216  T

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Target: scaffold0527; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 11324 - 11279
Alignment:
Q  210 tcgtttgttcatccctcgatttggactacgattgaagtttcaagac 255  Q
    |||||||||||||||| ||| |||||| ||| ||||||||||||||    
T  11324 tcgtttgttcatcccttgatctggactgcgactgaagtttcaagac 11279  T

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