View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_32 (Length: 275)
Name: NF14206_high_32
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 35031444 - 35031200
Alignment:
| Q |
18 |
ggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgttttggaaaaacaacggagcttttaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
35031444 |
ggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgtttgg---aaacaacggagcttttaa |
35031348 |
T |
|
| Q |
118 |
ttctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgcttt----gtaaattttatcctctagattttagtgag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35031347 |
ttctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgctttgtaagtaaattttatcctctagattttagtgag |
35031248 |
T |
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| Q |
214 |
caagagaaaattaatttgagatatcaacttggtcactttcatcttgat |
261 |
Q |
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| T |
35031247 |
caagagaaaattaatttgagatatcaacttcgtcacttccatcttgat |
35031200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 1195756 - 1195510
Alignment:
| Q |
17 |
gggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgttttggaaaaacaacggagctttta |
116 |
Q |
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|||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| |||||||||| ||||||||| | |||||| |||||||||| |
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| T |
1195756 |
gggtcagcattttagagtgaatctcttttgtgttacaattgatcaacaattgcaggaattgaatcacaggttttgtccgg---aaacaatggagctttta |
1195660 |
T |
|
| Q |
117 |
attctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgct-ttg----taaattttatcctctagattttagtg |
211 |
Q |
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| T |
1195659 |
attctaagcaatagtttggttcctaaggatgtttacaaagcatttgatatagataatatatgtgctcttgtacataaattttatccattagatttcggtg |
1195560 |
T |
|
| Q |
212 |
agcaagagaaaattaatttgagatatcaacttggtcactttcatcttgat |
261 |
Q |
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||||||| |||| | |||||||||||| ||| | |||| ||||||||| |
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| T |
1195559 |
agcaagacaaaaaaagtttgagatatcatcttcattacttccatcttgat |
1195510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 1286080 - 1285834
Alignment:
| Q |
17 |
gggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgttttggaaaaacaacggagctttta |
116 |
Q |
| |
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|||||||||||||||||| ||| | |||| ||||||||||||||| |||||||| |||||||||| ||||||||| | |||||| |||||||||| |
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| T |
1286080 |
gggtcaacattttagagtgaatatcttttgtgttacaattgatcaacaattgcaggaattgaatcacaggttttgtccgg---aaacaatggagctttta |
1285984 |
T |
|
| Q |
117 |
attctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgct-ttg----taaattttatcctctagattttagtg |
211 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||| |
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| T |
1285983 |
attctaagcaatagtttggttcctaaggatgtttacaaagcatttgatatagataatatatgtgctcttgtacataaattttatccattagatttcggtg |
1285884 |
T |
|
| Q |
212 |
agcaagagaaaattaatttgagatatcaacttggtcactttcatcttgat |
261 |
Q |
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||||||| |||| | |||||||||||| ||| | |||| ||||||||| |
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| T |
1285883 |
agcaagacaaaaaaagtttgagatatcatcttcattacttccatcttgat |
1285834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 17625891 - 17625645
Alignment:
| Q |
17 |
gggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgttttggaaaaacaacggagctttta |
116 |
Q |
| |
|
|||||| ||||||||||| ||||| |||| ||||||||||||||| |||||||| |||||||||| ||||||||| | | |||||| |||||||||| |
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| T |
17625891 |
gggtcagcattttagagtgaatctcttttgtgttacaattgatcaacaattgcaggaattgaatcacaggttttgtctgg---aaacaatggagctttta |
17625795 |
T |
|
| Q |
117 |
attctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgct-ttg----taaattttatcctctagattttagtg |
211 |
Q |
| |
|
|||||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| |
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| T |
17625794 |
attctaagcaatagtttggttccaaaggatgtttacaaagcatttgatatagataatatatgtgctcttgtacataaattttatccattagatttcagtg |
17625695 |
T |
|
| Q |
212 |
agcaagagaaaattaatttgagatatcaacttggtcactttcatcttgat |
261 |
Q |
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||||||| |||| |||||||||||||| ||| | |||| ||||||||| |
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| T |
17625694 |
agcaagacaaaaaaaatttgagatatcatcttcattacttccatcttgat |
17625645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 20553998 - 20553774
Alignment:
| Q |
17 |
gggtcaacattttagagtaaatcttttttatgttacaattgatcagcaattgcaagaattgaatcgtaggttttgttttggaaaaacaacggagctttta |
116 |
Q |
| |
|
|||||| |||||||||| ||||| |||| ||||||||||||||| |||||||| |||||||||| ||||||||| | |||||| |||||||||| |
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| T |
20553998 |
gggtcagcattttagagggaatctcttttgtgttacaattgatcaacaattgcaggaattgaatcacaggttttgtccgg---aaacaatggagctttta |
20553902 |
T |
|
| Q |
117 |
attctaagaaatagtttggtccctaaggatatgcacaaagcatttgatatagataatatatgtgct-ttg----taaattttatcctctagattttagtg |
211 |
Q |
| |
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|||||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||| |
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| T |
20553901 |
attctaagcaatagtttggttccaaaggatgtttacaaagcatttgatatagataatatatgtgctcttgtacataaattttatccattagatttcagtg |
20553802 |
T |
|
| Q |
212 |
agcaagagaaaattaatttgagatatca |
239 |
Q |
| |
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||||||| |||| | |||||||||||| |
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|
| T |
20553801 |
agcaagacaaaaaaattttgagatatca |
20553774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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