View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_33 (Length: 272)
Name: NF14206_high_33
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 36765471 - 36765734
Alignment:
| Q |
1 |
ctgttttgtttcatccataagtctaagcannnnnnnnactctactaattgatctatatttattcatcaacatgaaattttgagattttttaattgttacc |
100 |
Q |
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| T |
36765471 |
ctgttttgtttcatccataagtctaagcattttttttactctactaattgatctatatttattcatcaacatgaaattttgagattttttaattgttacc |
36765570 |
T |
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| Q |
101 |
agatgtttgaagacaattaacagcaagaagtatggagttgatttggtttgcttcacatctcatcctacaactgttatttactcttctaagaatggttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36765571 |
agatgtttgaagacaattaacagcaagaagtatggagttgatttggtttgcttcacatctcatcctacaactgttatttactcttctaagaatggttagg |
36765670 |
T |
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| Q |
201 |
atggtatgtgttatatatacctgtttgcatcaaagtttgaataactaaattgttttttcttctc |
264 |
Q |
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| T |
36765671 |
atggtatgtgttatatatacctgtttgcatcaaagtttgaataactaaattgttttttcttctc |
36765734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 45227903 - 45228166
Alignment:
| Q |
1 |
ctgttttgtttcatccataagtctaagcannnnnnnn-actctactaattgatcta-tatttattcatcaacatgaaattttgagattttttaattgtta |
98 |
Q |
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|||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
45227903 |
ctgttttgtttcatccatgagtctaagcatttttttgtactctaccaattgatctaatatttattcatcaagatgaaattatgagattttttaattgtta |
45228002 |
T |
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| Q |
99 |
ccagatgtttgaagacaattaacagcaagaagtatggagttgatttggtttgcttcacatctcatcctacaactgttatttactcttctaagaatggtta |
198 |
Q |
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| T |
45228003 |
ccagatgtttgaagacaattaacagcaagaagtatggagttgatttggtttgcttcacatctcatcctacaactgttaattactcttctaagaatggttg |
45228102 |
T |
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| Q |
199 |
ggatggtatgtgttatatatacctgtttgcatcaaagtttgaataactaaattgttttttcttctc |
264 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45228103 |
ggatggtatgtgt--tatatacctgtttgcatcaaagtttgaataaataaattgttttttcttctc |
45228166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 28486833 - 28487011
Alignment:
| Q |
39 |
ctctactaattgatctatatttattcatcaacatgaaattttgagattttttaattgttaccagatgtttgaagacaattaacagcaagaagtatggagt |
138 |
Q |
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|||||| ||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||| ||||| ||||| || |
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| T |
28486833 |
ctctaccaattgatctatatttgttcatcaacctgaaattttgagatttcctaactgttaccagatctttgaagacaattaacagtaagaaatatggggt |
28486932 |
T |
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| Q |
139 |
tgatttggtttgcttcacatctcatcctacaactgttatttactcttctaagaatggttaggatggtatgtgttatata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28486933 |
tgatttggtttgcttcacatctcatcctacaactgtcatttactcttctaagaatggttgggatggtatgtgttatata |
28487011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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