View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_34 (Length: 263)
Name: NF14206_high_34
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_34 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 26453612 - 26453441
Alignment:
| Q |
92 |
gggtacatcacacgagggaactgcatctagggtcttaaaaaacatgttaagtcataagagcatctccaacgcctattctttcctagttttcttagcaaaa |
191 |
Q |
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| T |
26453612 |
gggtacatcacacgagggaactgcatctagggtcttaaaaaacatgttaagtcataagagcatctccaacgcctattctttcctagttttcttagcaaaa |
26453513 |
T |
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| Q |
192 |
gaatatatttttatgttttatgtattggagatcaacgagctggatgaccctgtggagaaaaattctcccact |
263 |
Q |
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| T |
26453512 |
gaacatatttttatgttttatgtattggagatcaacgagctggatgaccctgtggagaacaattctcccact |
26453441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 26454175 - 26454087
Alignment:
| Q |
5 |
tagaaatattgaaaattgcttgcgtaaaatttgagaacagttgaagctattcaatcaatgcattatgcgtgatgcatacaaggttcagg |
93 |
Q |
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| T |
26454175 |
tagaaatattgaaaattgcttgcgtaaaatttgaaaatagttgaagctattcaatcaatgcattatgcgtgatgcatacaaggttcagg |
26454087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 47680266 - 47680377
Alignment:
| Q |
152 |
catctccaacgcctattctttcctagttttcttagcaaa--agaatatatttttatgttttatgtattggagatcaacgagctggatgaccctgtggaga |
249 |
Q |
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| T |
47680266 |
catctccaacgtctgttctttcttggtgttcttagcaaacaagaacatatttttatattttatgcattggagatcaatgagctggatgacattgtggaga |
47680365 |
T |
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| Q |
250 |
aaaattctccca |
261 |
Q |
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| T |
47680366 |
acagttctccca |
47680377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 31704706 - 31704810
Alignment:
| Q |
148 |
agagcatctccaacgcctattctttcctagttttcttagcaaa--agaatatatttttatgttttatgtattggagatcaacgagctggatgaccctgtg |
245 |
Q |
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||||||||||| | ||| ||||||| |||| ||||||||||| |||| ||||||||||||| |||| |||||||||| |||||||||||| ||||| |
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| T |
31704706 |
agagcatctccgattcctgttctttcttagtattcttagcaaacaagaacatatttttatgttgtatgcattggagatcgttgagctggatgacactgtg |
31704805 |
T |
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| Q |
246 |
gagaa |
250 |
Q |
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| T |
31704806 |
gagaa |
31704810 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 33948371 - 33948456
Alignment:
| Q |
167 |
ttctttcctagttttcttagcaaa--agaatatatttttatgttttatgtattggagatcaacgagctggatgaccctgtggagaa |
250 |
Q |
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| T |
33948371 |
ttctttcttagtgttcttagcaaacaagaacatatttttatgttctatgtattggagatcaatgaggtggatgacactgtggagaa |
33948456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 11727407 - 11727316
Alignment:
| Q |
148 |
agagcatctccaacgcctattctttcctagttttcttagcaa--aagaatatatttttatgttttatgtattggagatcaacgagctggatg |
237 |
Q |
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|||| ||||||||||| | |||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||| ||| |||||| |
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| T |
11727407 |
agagtatctccaacgcatgttcttttctagtgttcttagcaatcaagaacatatttttatgttatatgcattggagatcaatgagttggatg |
11727316 |
T |
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