View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14206_high_5 (Length: 500)

Name: NF14206_high_5
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14206_high_5
NF14206_high_5
[»] chr6 (32 HSPs)
chr6 (1-297)||(10727824-10728120)
chr6 (298-459)||(17841530-17841686)
chr6 (299-460)||(28152062-28152217)
chr6 (316-463)||(34595114-34595256)
chr6 (363-460)||(4877967-4878061)
chr6 (316-460)||(8776908-8777052)
chr6 (297-353)||(17302517-17302573)
chr6 (298-460)||(10770607-10770776)
chr6 (402-460)||(10339054-10339112)
chr6 (402-460)||(17327590-17327648)
chr6 (364-457)||(32978842-32978933)
chr6 (316-353)||(3398599-3398636)
chr6 (316-460)||(8365448-8365598)
chr6 (316-353)||(12696304-12696341)
chr6 (298-353)||(10842494-10842549)
chr6 (316-395)||(16766677-16766753)
chr6 (297-352)||(17435161-17435215)
chr6 (297-328)||(34225886-34225917)
chr6 (426-460)||(7723199-7723233)
chr6 (425-463)||(10842617-10842655)
chr6 (316-353)||(426556-426593)
chr6 (316-353)||(7938096-7938133)
chr6 (316-353)||(9027158-9027195)
chr6 (316-353)||(9107412-9107449)
chr6 (298-326)||(7938060-7938088)
chr6 (297-325)||(8777061-8777089)
chr6 (316-352)||(9658859-9658895)
chr6 (298-326)||(18367781-18367809)
chr6 (313-353)||(19147445-19147485)
chr6 (296-332)||(28715239-28715275)
chr6 (365-460)||(28715321-28715414)
chr6 (363-395)||(32511669-32511701)
[»] scaffold0793 (1 HSPs)
scaffold0793 (363-490)||(4791-4918)
[»] chr4 (32 HSPs)
chr4 (363-490)||(715515-715642)
chr4 (363-490)||(752841-752968)
chr4 (316-460)||(23292926-23293065)
chr4 (300-353)||(30298910-30298963)
chr4 (300-353)||(30327778-30327831)
chr4 (297-463)||(49430981-49431148)
chr4 (2-62)||(8324402-8324462)
chr4 (401-460)||(3064868-3064927)
chr4 (363-460)||(28964188-28964283)
chr4 (402-462)||(29205529-29205589)
chr4 (366-460)||(16073421-16073513)
chr4 (299-353)||(12895158-12895211)
chr4 (316-461)||(21945483-21945623)
chr4 (425-460)||(5775304-5775339)
chr4 (298-352)||(24543942-24543997)
chr4 (317-460)||(35157925-35158063)
chr4 (425-459)||(4383450-4383484)
chr4 (426-464)||(10499223-10499261)
chr4 (363-457)||(28084546-28084640)
chr4 (297-326)||(4157101-4157130)
chr4 (425-458)||(22440559-22440592)
chr4 (425-462)||(36635414-36635451)
chr4 (149-186)||(41029688-41029725)
chr4 (425-462)||(42640608-42640645)
chr4 (298-350)||(7970483-7970535)
chr4 (289-325)||(12628666-12628702)
chr4 (298-326)||(20633429-20633457)
chr4 (298-326)||(22234954-22234982)
chr4 (425-461)||(28470449-28470485)
chr4 (143-191)||(29083182-29083230)
chr4 (300-353)||(35723427-35723484)
chr4 (17-45)||(37035537-37035565)
[»] chr3 (41 HSPs)
chr3 (299-464)||(20503429-20503588)
chr3 (316-458)||(28917981-28918120)
chr3 (297-460)||(40993275-40993433)
chr3 (316-460)||(55401055-55401194)
chr3 (298-353)||(40052295-40052349)
chr3 (297-353)||(33359721-33359778)
chr3 (363-460)||(27505270-27505370)
chr3 (323-458)||(4987222-4987363)
chr3 (313-353)||(10318076-10318116)
chr3 (314-460)||(10954930-10955074)
chr3 (425-467)||(11610593-11610635)
chr3 (298-395)||(26508067-26508166)
chr3 (316-353)||(3865598-3865635)
chr3 (425-462)||(8842413-8842450)
chr3 (297-353)||(37077319-37077375)
chr3 (425-460)||(4990912-4990947)
chr3 (302-353)||(6525722-6525773)
chr3 (297-332)||(13845580-13845615)
chr3 (425-460)||(14979233-14979268)
chr3 (425-460)||(34185052-34185087)
chr3 (367-460)||(7171529-7171620)
chr3 (425-459)||(8789489-8789523)
chr3 (297-351)||(22774114-22774168)
chr3 (143-189)||(29287095-29287141)
chr3 (402-460)||(41961579-41961637)
chr3 (299-340)||(1852600-1852641)
chr3 (316-353)||(10335328-10335365)
chr3 (316-353)||(14829670-14829707)
chr3 (316-353)||(26492247-26492284)
chr3 (297-353)||(34910278-34910334)
chr3 (5-42)||(47820179-47820216)
chr3 (298-326)||(750706-750734)
chr3 (298-326)||(14027959-14027987)
chr3 (298-353)||(14979138-14979198)
chr3 (313-353)||(21720741-21720781)
chr3 (425-461)||(21861659-21861695)
chr3 (298-326)||(23870622-23870650)
chr3 (363-395)||(25948890-25948922)
chr3 (298-353)||(28812477-28812532)
chr3 (425-465)||(40052396-40052436)
chr3 (298-326)||(45451523-45451551)
[»] chr1 (32 HSPs)
chr1 (299-460)||(46348323-46348479)
chr1 (316-458)||(1486646-1486788)
chr1 (318-460)||(22515827-22515964)
chr1 (303-353)||(18556498-18556548)
chr1 (297-460)||(37598792-37598950)
chr1 (363-460)||(1815281-1815376)
chr1 (317-458)||(42359391-42359527)
chr1 (363-460)||(18337353-18337448)
chr1 (297-465)||(51409980-51410149)
chr1 (316-464)||(5944261-5944417)
chr1 (298-353)||(14359563-14359623)
chr1 (298-353)||(6427313-6427367)
chr1 (425-460)||(21365992-21366027)
chr1 (425-460)||(22947814-22947849)
chr1 (425-460)||(35702542-35702577)
chr1 (425-460)||(47989592-47989627)
chr1 (299-353)||(6427425-6427478)
chr1 (402-460)||(9828116-9828174)
chr1 (402-460)||(40917821-40917879)
chr1 (316-353)||(398807-398844)
chr1 (316-353)||(5927382-5927419)
chr1 (425-458)||(16297223-16297256)
chr1 (316-353)||(40917731-40917768)
chr1 (316-353)||(48040504-48040541)
chr1 (316-353)||(48450629-48450666)
chr1 (317-353)||(2896163-2896199)
chr1 (298-326)||(10577822-10577850)
chr1 (298-326)||(25934572-25934600)
chr1 (313-353)||(29144400-29144440)
chr1 (297-353)||(31672937-31672988)
chr1 (298-326)||(38078743-38078771)
chr1 (298-326)||(48548049-48548077)
[»] chr2 (31 HSPs)
chr2 (298-461)||(37558939-37559097)
chr2 (363-458)||(2438661-2438754)
chr2 (298-460)||(18840953-18841115)
chr2 (230-293)||(36518260-36518323)
chr2 (299-460)||(38117099-38117261)
chr2 (402-462)||(26769583-26769643)
chr2 (317-394)||(24894370-24894444)
chr2 (316-460)||(15972853-15972992)
chr2 (363-459)||(28596493-28596587)
chr2 (297-353)||(37419703-37419760)
chr2 (316-352)||(6940235-6940271)
chr2 (297-353)||(19580323-19580379)
chr2 (297-353)||(39323225-39323281)
chr2 (314-353)||(21374741-21374780)
chr2 (425-460)||(37419838-37419873)
chr2 (413-460)||(42511322-42511369)
chr2 (297-390)||(30404858-30404953)
chr2 (297-339)||(41843402-41843444)
chr2 (297-327)||(44770206-44770236)
chr2 (316-353)||(12940977-12941014)
chr2 (316-353)||(14996266-14996303)
chr2 (316-353)||(20539716-20539753)
chr2 (298-327)||(27084230-27084259)
chr2 (425-461)||(10535684-10535720)
chr2 (425-461)||(11223792-11223828)
chr2 (298-326)||(21374781-21374809)
chr2 (316-352)||(21624246-21624282)
chr2 (298-326)||(26769461-26769489)
chr2 (298-326)||(27447088-27447116)
chr2 (321-353)||(27460011-27460043)
chr2 (363-395)||(29176496-29176528)
[»] chr8 (18 HSPs)
chr8 (298-460)||(36450694-36450851)
chr8 (297-353)||(31109560-31109616)
chr8 (299-352)||(22204603-22204655)
chr8 (316-353)||(22651956-22651993)
chr8 (316-353)||(29510346-29510383)
chr8 (404-460)||(11803333-11803389)
chr8 (424-460)||(31514937-31514973)
chr8 (298-332)||(5137484-5137518)
chr8 (402-460)||(15816058-15816116)
chr8 (319-353)||(25192389-25192423)
chr8 (425-463)||(25566914-25566952)
chr8 (425-467)||(29510226-29510268)
chr8 (297-326)||(3951616-3951645)
chr8 (316-353)||(13437006-13437043)
chr8 (297-326)||(24413647-24413676)
chr8 (313-353)||(5813569-5813609)
chr8 (425-461)||(11927014-11927050)
chr8 (298-326)||(20785546-20785574)
[»] chr7 (27 HSPs)
chr7 (316-460)||(5409771-5409915)
chr7 (298-460)||(15680771-15680928)
chr7 (365-461)||(21880178-21880272)
chr7 (298-352)||(7197340-7197394)
chr7 (299-353)||(25791616-25791670)
chr7 (316-460)||(43027404-43027548)
chr7 (363-465)||(9778524-9778629)
chr7 (318-353)||(12010022-12010057)
chr7 (298-353)||(18215228-18215283)
chr7 (316-353)||(24105658-24105695)
chr7 (316-463)||(24339622-24339775)
chr7 (298-353)||(11072260-11072315)
chr7 (297-332)||(19213772-19213807)
chr7 (298-353)||(26019673-26019728)
chr7 (425-460)||(29763129-29763164)
chr7 (298-353)||(32308082-32308137)
chr7 (425-460)||(35862035-35862070)
chr7 (402-460)||(598269-598327)
chr7 (300-353)||(11665482-11665536)
chr7 (321-395)||(25481887-25481958)
chr7 (427-465)||(27945104-27945142)
chr7 (426-460)||(30813882-30813916)
chr7 (316-353)||(11061118-11061155)
chr7 (363-459)||(20549815-20549909)
chr7 (299-352)||(37742486-37742539)
chr7 (316-352)||(13770671-13770707)
chr7 (297-333)||(29812741-29812777)
[»] chr5 (31 HSPs)
chr5 (298-353)||(14674231-14674286)
chr5 (316-458)||(21190998-21191135)
chr5 (297-458)||(43001761-43001922)
chr5 (297-460)||(43564845-43565000)
chr5 (363-460)||(21576685-21576780)
chr5 (313-390)||(39698518-39698592)
chr5 (316-353)||(22013394-22013431)
chr5 (425-462)||(22423762-22423799)
chr5 (316-352)||(21522730-21522766)
chr5 (316-352)||(21533296-21533332)
chr5 (298-353)||(6035445-6035500)
chr5 (425-460)||(10298634-10298669)
chr5 (425-460)||(14873606-14873641)
chr5 (316-448)||(15382457-15382592)
chr5 (425-460)||(17123131-17123166)
chr5 (425-460)||(35017127-35017162)
chr5 (425-460)||(39698636-39698671)
chr5 (363-460)||(21194063-21194158)
chr5 (301-353)||(3966467-3966520)
chr5 (316-353)||(19552585-19552622)
chr5 (316-353)||(36642804-36642841)
chr5 (425-461)||(4105343-4105379)
chr5 (316-352)||(6770523-6770559)
chr5 (297-353)||(7175061-7175117)
chr5 (298-326)||(15382421-15382449)
chr5 (316-352)||(15410491-15410527)
chr5 (317-353)||(19579682-19579718)
chr5 (425-461)||(19820327-19820363)
chr5 (439-467)||(32766865-32766893)
chr5 (425-457)||(39268541-39268573)
chr5 (300-328)||(41995417-41995445)
[»] scaffold0103 (1 HSPs)
scaffold0103 (309-392)||(51784-51864)
[»] scaffold0053 (1 HSPs)
scaffold0053 (316-462)||(8778-8919)
[»] scaffold0003 (1 HSPs)
scaffold0003 (316-464)||(241574-241728)
[»] scaffold0652 (1 HSPs)
scaffold0652 (318-459)||(403-539)
[»] scaffold0027 (1 HSPs)
scaffold0027 (424-460)||(46740-46776)
[»] scaffold0475 (1 HSPs)
scaffold0475 (425-460)||(3392-3427)
[»] scaffold0223 (1 HSPs)
scaffold0223 (316-390)||(20152-20223)
[»] scaffold0136 (1 HSPs)
scaffold0136 (402-460)||(3778-3836)
[»] scaffold0025 (1 HSPs)
scaffold0025 (298-395)||(23730-23826)
[»] scaffold0019 (1 HSPs)
scaffold0019 (297-353)||(71678-71740)
[»] scaffold0004 (2 HSPs)
scaffold0004 (425-459)||(92906-92940)
scaffold0004 (313-353)||(92784-92824)
[»] scaffold0450 (1 HSPs)
scaffold0450 (426-463)||(8561-8598)
[»] scaffold0306 (1 HSPs)
scaffold0306 (316-353)||(13380-13417)
[»] scaffold0171 (1 HSPs)
scaffold0171 (297-326)||(23370-23399)
[»] scaffold0152 (1 HSPs)
scaffold0152 (316-353)||(21910-21947)
[»] scaffold0018 (1 HSPs)
scaffold0018 (316-353)||(178861-178898)
[»] scaffold0007 (1 HSPs)
scaffold0007 (316-353)||(225310-225347)
[»] scaffold0116 (1 HSPs)
scaffold0116 (298-326)||(9842-9870)
[»] scaffold0086 (1 HSPs)
scaffold0086 (313-353)||(2900-2940)
[»] scaffold0049 (1 HSPs)
scaffold0049 (298-326)||(63709-63737)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10728120 - 10727824
Alignment:
Q  1 tctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatggagtgatttcgatgccggagctagtggatgaagta 100  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10728120 tctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatggagtgatttcgatgccggagctagtggatgaagta 10728021  T
Q  101 aaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaacccaagagattgcctttgtagttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10728020 aaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaacccaagagattgcctttgtagttctt 10727921  T
Q  201 gagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgtttgtgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10727920 gagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgtttgtgt 10727824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 298 - 459
Target Start/End: Complemental strand, 17841686 - 17841530
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc 397  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||         |||||||||| |||||||||| |||||  |||| |    
T  17841686 ctatgaagcactgatacggacacggacactgacacgccgacacagctaataatttg---aaaaaatcacataatttagtgtaattacaagtgacggtgtc 17841590  T
Q  398 ctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
      | ||||||||   ||||||| | | ||||||||||| |||||||||||||||||||||||    
T  17841589 --ggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 460
Target Start/End: Original strand, 28152062 - 28152217
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcc 398  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||         ||||||||||||||||||||| |||||| |||| |     
T  28152062 tatgaagcacggatatggacacggacactgacacgccgacaaagctaataatttg----aaaaatcacataattcagtgtaattacaagtgtcggtgtc- 28152156  T
Q  399 tgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
     | |||||||||  ||||||| | | |||| |||||| ||||||||||| ||||||||||||    
T  28152157 -ggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 34595114 - 34595256
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    |||||||||| |||||||| |||||| |||||||||||         ||||||||||||||||||||| |||||| |||| |  | |||||||||  |||    
T  34595114 gacacggacaatgacacgccgacacaactaataatttgaaaaaa---tcacataattcagtgtaattacaagtgtcggtgtc--ggacacgacacgtgtc 34595208  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
     ||| | | ||||| ||||| |||||||||||||||||||||||||||    
T  34595209 tgacaccgggacacacctaatccgaggagtgtccgtgcttcatagatt 34595256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 4877967 - 4878061
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||| ||| |||||| |||||| |||| |  | |||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  4877967 tcacataattaagtataattacaagtgtcggtgtc--ggacacgacacatgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 460
Target Start/End: Complemental strand, 8777052 - 8776908
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc---ctgtacacgacacaa 412  Q
    ||||||||||||||||||| |||||| |||||||||||         ||||| ||||||||||||||| ||||||||||| |   |   |||||||||      
T  8777052 gacacggacactgacacgccgacacaactaataatttgaaaaaa---tcacaaaattcagtgtaattacaagtgttggtgtcggacacgacacgacacgt 8776956  T
Q  413 gtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||| | | ||||| ||||| ||||||||||||||||||||||||    
T  8776955 gtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 17302517 - 17302573
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||    
T  17302517 tctatgaagcgcagatacggacacgaacactgacacgctgacacaactaataatttg 17302573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 10770776 - 10770607
Alignment:
Q  298 ctatgaagcacggatacggacacg-----gacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttg 392  Q
    ||||||||||||||||||||||||     |||||||||||||  ||||| |||||||||||         ||||||||||||||||||||| |||||| |    
T  10770776 ctatgaagcacggatacggacacgacatggacactgacacgccaacacaactaataatttgaaaaaa---tcacataattcagtgtaattacaagtgtcg 10770680  T
Q  393 gtggcctgt---acacgacaca--agtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||| | |||   ||||||||||   |||||| || | |||| |||||| | ||||||||||||||||||||||    
T  10770679 gtgtcgtgtcagacacgacacacgtgtccgatgccgggacatgcctaatctgaggagtgtccgtgcttcatag 10770607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 10339112 - 10339054
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||| ||||||| | | ||||||||||| | ||||||||||||||||||||||    
T  10339112 acacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 17327648 - 17327590
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||  ||| ||| ||| ||||||||||| ||||||||||||||||||||||||    
T  17327648 acacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 32978933 - 32978842
Alignment:
Q  364 cacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttca 457  Q
    ||||||||| |||||||||| |||||| |||| |  | |||||||||| ||||||| | | |||||| |||| || ||||||||||||||||||    
T  32978933 cacataattaagtgtaattacaagtgtcggtgtc--ggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 3398599 - 3398636
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3398599 gacacggacactgacacgccgacacagctaataatttg 3398636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 460
Target Start/End: Complemental strand, 8365598 - 8365448
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---------acacg 406  Q
    ||||||||||||||||||| |||||| |||||||||||         ||||||||||| ||||||||| |||||| |||| | |||         |||||    
T  8365598 gacacggacactgacacgccgacacaactaataatttgaaaata---tcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacg 8365502  T
Q  407 acacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||  ||||||| | | ||||||||||| ||||||||| ||||||||||||||    
T  8365501 acacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 12696304 - 12696341
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12696304 gacacggacactgacacgccgacacagctaataatttg 12696341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 10842494 - 10842549
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||| |||||||  ||||| ||||||| ||||| ||||||||||||    
T  10842494 ctatgaagcacggacacggacattgacacggacacgccgacaccgctaataatttg 10842549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 16766677 - 16766753
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtg 395  Q
    |||| |||||||||||||| ||||||||||||||||||         ||||||||||||||||||||| |||||| ||||    
T  16766677 gacatggacactgacacgccgacacagctaataatttg---aaaaaatcacataattcagtgtaattacaagtgtcggtg 16766753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 17435161 - 17435215
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| ||||||||||||| |||  |||| ||||||||||||    
T  17435161 tctatgaagcacggatacg-acacggacactgatacgtcgacatagctaataattt 17435215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 328
Target Start/End: Complemental strand, 34225917 - 34225886
Alignment:
Q  297 tctatgaagcacggatacggacacggacactg 328  Q
    ||||||||||||||||||||||||||||||||    
T  34225917 tctatgaagcacggatacggacacggacactg 34225886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 7723233 - 7723199
Alignment:
Q  426 acacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||| ||||||||||||||||||||||||    
T  7723233 acacgcctaatccgaggagtgtccgtgcttcatag 7723199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 10842617 - 10842655
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  10842617 gacacggctaatccgaggagtgtccgtgcttcatagatt 10842655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 426593 - 426556
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  426593 gacacggacactgacacgccgacacagttaataatttg 426556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 7938096 - 7938133
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  7938096 gacatggacactgacacgccgacacagctaataatttg 7938133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 9027158 - 9027195
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  9027158 gacacggacactgacacgccgacaccgctaataatttg 9027195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 9107449 - 9107412
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  9107449 gacacggacactaacacgccgacacagctaataatttg 9107412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 7938060 - 7938088
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  7938060 ctatgaagcacggatacggacacggacac 7938088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 8777089 - 8777061
Alignment:
Q  297 tctatgaagcacggatacggacacggaca 325  Q
    |||||||||||||||||||||||||||||    
T  8777089 tctatgaagcacggatacggacacggaca 8777061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 9658859 - 9658895
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  9658859 gacacggacactgacacgccgacaccgctaataattt 9658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 18367781 - 18367809
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  18367781 ctatgaagcacggatacggacacggacac 18367809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 19147485 - 19147445
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| |||||||||||||| | ||||||||||||||||||    
T  19147485 acggatacggacactgacacacggacacagctaataatttg 19147445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 28715239 - 28715275
Alignment:
Q  296 gtctatgaagcacggatacggacacggacactgacac 332  Q
    |||||||||||||||||||||| |||||||| |||||    
T  28715239 gtctatgaagcacggatacggatacggacacggacac 28715275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 460
Target Start/End: Original strand, 28715321 - 28715414
Alignment:
Q  365 acataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||||||||||| |||||| |||| |  | |||||||||  || |||| | | |||||||||||  |||| ||||| ||||||||||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtc--ggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 32511701 - 32511669
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||||||||||||||||||| |||||||||||    
T  32511701 tcacataattcagtgtaattataagtgttggtg 32511669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 4918 - 4791
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  4918 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T
Q  463 tattatgagtattagaaaagtttgatga 490  Q
    ||||||||||||||||||||||||||||    
T  4818 tattatgagtattagaaaagtttgatga 4791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 715642 - 715515
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  715642 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T
Q  463 tattatgagtattagaaaagtttgatga 490  Q
    ||||||||||||||||||||||||||||    
T  715542 tattatgagtattagaaaagtttgatga 715515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 752968 - 752841
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  752968 tcacataattcagtgtaattacaagtgttggtgtcttgtacacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T
Q  463 tattatgagtattagaaaagtttgatga 490  Q
    ||||||||||||||||||||||||||||    
T  752868 tattatgagtattagaaaagtttgatga 752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 460
Target Start/End: Complemental strand, 23293065 - 23292926
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    |||||||||| |||||||| ||||||||||||||||||         |||||||||||||| |||||| |||||| |||| |  | |||||||||  |||    
T  23293065 gacacggacaatgacacgccgacacagctaataatttgaaaaaa---tcacataattcagtataattacaagtgtcggtgtc--ggacacgacacgtgtc 23292971  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||| | | ||||||||||| ||||||||||||||||||||||||    
T  23292970 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 30298910 - 30298963
Alignment:
Q  300 atgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  30298910 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttg 30298963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 30327778 - 30327831
Alignment:
Q  300 atgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  30327778 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttg 30327831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 463
Target Start/End: Original strand, 49430981 - 49431148
Alignment:
Q  297 tctatgaagcacggatacggacacg-----gacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgtt 391  Q
    ||||||||||||||| |||||||||     |||| |||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||     
T  49430981 tctatgaagcacggacacggacacgactcggacagtgacacgccgacacagctaataatttgaaaaaaa--tcacataattcagtgtaattaaaagtgtc 49431078  T
Q  392 ggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
    |||| |  | |||||||||  |||| || | | ||||||||| | ||||||||||||| ||||| |||||||    
T  49431079 ggtgtc--ggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatagatt 49431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 8324462 - 8324402
Alignment:
Q  2 ctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca 62  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||||| |||||||||||    
T  8324462 ctcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca 8324402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 460
Target Start/End: Complemental strand, 3064927 - 3064868
Alignment:
Q  401 tacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||||    
T  3064927 tacacgacacatgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcatag 3064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 460
Target Start/End: Complemental strand, 28964283 - 28964188
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||||||||||||| ||||||  ||| |  | ||||||||||  |||||| | | ||||||||||| ||||||||||||| ||||||||||    
T  28964283 tcacataattcagtgtaattacaagtgtctgtgtc--ggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 29205529 - 29205589
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    |||||||||| ||||||| | | ||||||||||| ||||||||||| ||||||||||||||    
T  29205529 acacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagat 29205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 460
Target Start/End: Original strand, 16073421 - 16073513
Alignment:
Q  366 cataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||||||||||| |||||| |||| |  | |||||| ||| ||||||| |   ||||||||||| ||||||||||||| ||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtc--ggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 12895211 - 12895158
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||| ||||||||||||||||| ||||||| || |||||||||||||||    
T  12895211 tatgaagcacagatacggacacggacac-gacacgccgaaacagctaataatttg 12895158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 461
Target Start/End: Original strand, 21945483 - 21945623
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    ||||| |||||||||| || ||||||||||||||||||         | ||||||||||||||||||| |||||| |||| |  | ||| |||||| |||    
T  21945483 gacacagacactgacatgccgacacagctaataatttgaaaaaa---tgacataattcagtgtaattacaagtgtcggtgtc--ggacatgacacatgtc 21945577  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    |||| | || |||||||||| ||||||||||||  |||||| ||||    
T  21945578 cgacaccgcaacacgcctaatccgaggagtgtctatgcttcttaga 21945623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 5775339 - 5775304
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5775339 gacacgcctaatccgaggagtgtccgtgcttcatag 5775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 24543942 - 24543997
Alignment:
Q  298 ctatgaagcacggatacggacacg-gacactgacacgctgacacagctaataattt 352  Q
    |||||||||| ||||||||||||  ||||||||||||| |||||| ||||||||||    
T  24543942 ctatgaagcatggatacggacaccagacactgacacgccgacacaactaataattt 24543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 460
Target Start/End: Complemental strand, 35158063 - 35157925
Alignment:
Q  317 acacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtcc 416  Q
    |||||||||||||||||| ||| || |||||||||||         |||||||||| |||||||||| |||||| |||| | || |||||||||| ||||    
T  35158063 acacggacactgacacgccgacgcaactaataatttggaaaaa---tcacataatttagtgtaattataagtgtcggtgtc-tg-acacgacacatgtcc 35157969  T
Q  417 gacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
     || | |  |||||| ||| ||||| ||||||||||||||||||    
T  35157968 aacaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 459
Target Start/End: Original strand, 4383450 - 4383484
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    ||||||||||| |||||||||||||||||||||||    
T  4383450 gacacgcctaatccgaggagtgtccgtgcttcata 4383484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 10499261 - 10499223
Alignment:
Q  426 acacgcctaagccgaggagtgtccgtgcttcatagatta 464  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  10499261 acacgcctaatccgaggattgtccgtgcttcatagatta 10499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 457
Target Start/End: Original strand, 28084546 - 28084640
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttca 457  Q
    |||||||||||| |||||||| ||||||  ||| | |||    |||||  ||||||| | | ||||||||||| |||||||||||||||||||||    
T  28084546 tcacataattcaatgtaattacaagtgtctgtgtcgtgtcggtgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 4157101 - 4157130
Alignment:
Q  297 tctatgaagcacggatacggacacggacac 326  Q
    ||||||||||||||||||||||||||||||    
T  4157101 tctatgaagcacggatacggacacggacac 4157130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 22440592 - 22440559
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    ||||||||||| ||||||||||||||||||||||    
T  22440592 gacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 36635414 - 36635451
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  36635414 gacacgcctaatccgaagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 41029688 - 41029725
Alignment:
Q  149 tgtttgttttatgaatgatgttggaacccaagagattg 186  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  41029688 tgtttgttttatgaatggtgttggaacccaaaagattg 41029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 42640608 - 42640645
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  42640608 gacacgcctaatccgaggagtttccgtgcttcatagat 42640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 7970483 - 7970535
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataat 350  Q
    ||||||||||| ||| ||||||| |||||||||| |||||||| || ||||||    
T  7970483 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataat 7970535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 12628702 - 12628666
Alignment:
Q  289 tgtttgtgtctatgaagcacggatacggacacggaca 325  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  12628702 tgtttatgtctatgaagcacggatacggatacggaca 12628666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 20633429 - 20633457
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  20633429 ctatgaagcacggatacggacacggacac 20633457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 22234982 - 22234954
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  22234982 ctatgaagcacggatacggacacggacac 22234954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 28470449 - 28470485
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    |||| |||||| |||||||||||||||||||||||||    
T  28470449 gacatgcctaatccgaggagtgtccgtgcttcataga 28470485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 29083182 - 29083230
Alignment:
Q  143 ccgacatgtttgttttatgaatgatgttggaacccaagagattgccttt 191  Q
    ||||| || |||||||||||||| ||||||||||||| ||| |||||||    
T  29083182 ccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttt 29083230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 35723484 - 35723427
Alignment:
Q  300 atgaagcacggatacggacacg----gacactgacacgctgacacagctaataatttg 353  Q
    ||||||||| ||||||||||||    ||||||||||||| ||||| ||||||||||||    
T  35723484 atgaagcaccgatacggacacgacatgacactgacacgccgacaccgctaataatttg 35723427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 37035537 - 37035565
Alignment:
Q  17 acgatttgggttttatggaaagctagaaa 45  Q
    |||||||||||||||||||||||||||||    
T  37035537 acgatttgggttttatggaaagctagaaa 37035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 464
Target Start/End: Original strand, 20503429 - 20503588
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcc 398  Q
    ||||||||||||||||||||||| |||||||||||| |||||| | |||||||||         | ||||||||||||||||||| |||||| ||||       
T  20503429 tatgaagcacggatacggacacg-acactgacacgccgacacaacaaataatttgaaaaaa---tgacataattcagtgtaattacaagtgtcggtgt-- 20503522  T
Q  399 tgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatta 464  Q
    || |||||||||| ||| ||| | | ||||||||||| ||||||||||||||||||||||||||||    
T  20503523 tggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagatta 20503588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 458
Target Start/End: Original strand, 28917981 - 28918120
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    |||||||| |||||||||| |||| |||||||||||||         ||||||||||||||||||||| |||||| |||| | || |||||||||  |||    
T  28917981 gacacggaaactgacacgccgacatagctaataatttgaaaaaa---tcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtc 28918077  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    |||| | | ||||||||||| || |||||||||| ||||||||    
T  28918078 cgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 460
Target Start/End: Complemental strand, 40993433 - 40993275
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtgg 396  Q
    ||||||||||||||||||||||||| |||| |||||   ||||| |||||||||||          ||||||||||||||||||||| | |||| ||||     
T  40993433 tctatgaagcacggatacggacacg-acacggacacctcgacaccgctaataattt--aaaaaaaatcacataattcagtgtaattatatgtgtcggtgt 40993337  T
Q  397 cctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |  | |||||||||| ||||||| | | ||||||||||| ||||||||||||| ||||||||||    
T  40993336 c--ggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 55401055 - 55401194
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    |||||||||||||| |||| |||||| |||||||||||         |||||||||| |||||||||| |||||| |||| |  | |||||||||  |||    
T  55401055 gacacggacactgatacgccgacacaactaataatttgaaaaaa---tcacataatttagtgtaattacaagtgtcggtgtc--ggacacgacacgtgtc 55401149  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||| | | ||||||||||| ||||||||||||||||||||||||    
T  55401150 cgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 40052295 - 40052349
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40052295 ctatgaagcacggatacggacacg-acactgacacgccgacacagctaataatttg 40052349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 33359721 - 33359778
Alignment:
Q  297 tctatgaagcacggatac-ggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  33359721 tctatgaagcacggacaccggacacagacactgacacgctgacacagctaataatttg 33359778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 27505270 - 27505370
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgt---acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    |||||||||| |||||||||| |||||| |||| | |||   |||||||||  ||||||| | | |||| |||||| |||||||||||||||||||||||    
T  27505270 tcacataattaagtgtaattacaagtgtcggtgtcgtgtctgacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T
Q  460 g 460  Q
    |    
T  27505370 g 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 458
Target Start/End: Complemental strand, 4987363 - 4987222
Alignment:
Q  323 acactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---------acacgacacaag 413  Q
    |||||||||||| ||||||||||||||||||         ||||||||||||||||||||| ||||||||||| | |||         |||||||||  |    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaa---tcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtg 4987267  T
Q  414 tccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    |||||| | | ||||||||||| ||||||||||||||| ||||||    
T  4987266 tccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 10318116 - 10318076
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  10318116 acggacacggacactgacacgccgacacagctaataatttg 10318076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 460
Target Start/End: Original strand, 10954930 - 10955074
Alignment:
Q  314 cggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaag 413  Q
    |||||||| |||||||||||| |||||| |||||||||||         ||||||||||||||||||| | |||||| |||| |  | |||||||||  |    
T  10954930 cggacacgaacactgacacgccgacacaactaataatttgaaaaaa---tcacataattcagtgtaatcacaagtgtcggtgtc--ggacacgacacgtg 10955024  T
Q  414 tccgacgcagcgacacgcctaagccgagg---agtgtccgtgcttcatag 460  Q
    |||||| | | ||||||||||| ||||||   ||||||||||||||||||    
T  10955025 tccgacactgggacacgcctaatccgaggagtagtgtccgtgcttcatag 10955074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 11610593 - 11610635
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagattatta 467  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  11610593 gacacgcctaatctgaggagtgtccgtgcttcatagattatta 11610635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 26508067 - 26508166
Alignment:
Q  298 ctatgaagcacggatacggacacg-----gacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttg 392  Q
    |||||||| |||||||||||||||     || |||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||| |    
T  26508067 ctatgaagaacggatacggacacgatacagatactgacacgctgacacagctaataatttg---aaaaaatcacataattcagtgtaattacaagtgtcg 26508163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 3865635 - 3865598
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3865635 gacacggacactgacacgccgacacagctaataatttg 3865598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 8842413 - 8842450
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8842413 gacacgcctaatccgaggagtgtccgtgcttcatagat 8842450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 37077319 - 37077375
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||  |||||||||| |||||||| ||||| | ||||||||||    
T  37077319 tctatgaagcacggataaagacacggacagtgacacgccgacaccgataataatttg 37077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 4990947 - 4990912
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4990947 gacacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 6525773 - 6525722
Alignment:
Q  302 gaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||||||    
T  6525773 gaagcacggatacggacacgtacactgacatgtcgacaccgctaataatttg 6525722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 13845615 - 13845580
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacac 332  Q
    |||||||||||||||||||||||||||||| |||||    
T  13845615 tctatgaagcacggatacggacacggacaccgacac 13845580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 14979233 - 14979268
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14979233 gacacgcctaacccgaggagtgtccgtgcttcatag 14979268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 34185087 - 34185052
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34185087 gacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 460
Target Start/End: Original strand, 7171529 - 7171620
Alignment:
Q  367 ataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||| ||||||||| ||||||||||| |  | |||||||||  ||||||| | ||||||||||||| || ||||||||   ||||||||||    
T  7171529 ataattcggtgtaattacaagtgttggtgtc--ggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatag 7171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 459
Target Start/End: Complemental strand, 8789523 - 8789489
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    ||||||||||| |||||||||||||||||||||||    
T  8789523 gacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 22774168 - 22774114
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatt 351  Q
    |||||||||||||||||||||||| ||||| ||||||  |||||  |||||||||    
T  22774168 tctatgaagcacggatacggacacagacacagacacgtcgacaccactaataatt 22774114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 29287095 - 29287141
Alignment:
Q  143 ccgacatgtttgttttatgaatgatgttggaacccaagagattgcct 189  Q
    |||||||||||||||||||||||| ||||||| ||||| || |||||    
T  29287095 ccgacatgtttgttttatgaatgaagttggaatccaagggactgcct 29287141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 41961637 - 41961579
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||  ||||||| | | ||||||||||| ||||| ||||||||||||||||||    
T  41961637 acacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 1852600 - 1852641
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacac 340  Q
    |||||||||||||||| || |||||||| |||||||||||||    
T  1852600 tatgaagcacggatacagatacggacacggacacgctgacac 1852641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 10335365 - 10335328
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  10335365 gacacggacactgacacgccgacacaactaataatttg 10335328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 14829670 - 14829707
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  14829670 gacacagacactgacacgccgacacagctaataatttg 14829707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 26492284 - 26492247
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  26492284 gacacggacactgacacgccgacagagctaataatttg 26492247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 34910278 - 34910334
Alignment:
Q  297 tctatgaagcacggatacggaca-cggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||| | ||||| ||||||| |||||| |||||||||||    
T  34910278 tctatgaagcacggatacggacaccagacac-gacacgccgacacaactaataatttg 34910334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
Q  5 atttggcattcaacgatttgggttttatggaaagctag 42  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  47820179 atttggcatgcgacgatttgggttttatggaaagctag 47820216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 750734 - 750706
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  750734 ctatgaagcacggatacggacacggacac 750706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 14027959 - 14027987
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  14027959 ctatgaagcacggatacggacacggacac 14027987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 14979138 - 14979198
Alignment:
Q  298 ctatgaagcacggatacggacac-----ggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||||     ||||| || ||||| ||||||||||||||||||    
T  14979138 ctatgaagcacggatacggacacgacaaggacaatggcacgccgacacagctaataatttg 14979198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 21720741 - 21720781
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||| ||||| | ||||||||||    
T  21720741 acggacacggacactgacacgccgacaccgataataatttg 21720781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 21861659 - 21861695
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  21861659 gacacacctaatccgaggagtgtccgtgcttcataga 21861695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 23870650 - 23870622
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  23870650 ctatgaagcacggatacggacacggacac 23870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 25948922 - 25948890
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||||||||||||||||||| |||||||||||    
T  25948922 tcacataattcagtgtaattataagtgttggtg 25948890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 28812477 - 28812532
Alignment:
Q  298 ctatgaagcacggatacggac-acggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||| ||| |||||||| ||||||| |||||| |||||||||||    
T  28812477 ctatgaagcacggatacagacaacggacac-gacacgccgacacaactaataatttg 28812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 40052396 - 40052436
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagattat 465  Q
    ||||||||||| ||||||||||| |||||||||||| ||||    
T  40052396 gacacgcctaatccgaggagtgttcgtgcttcataggttat 40052436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 45451523 - 45451551
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  45451523 ctatgaagcacggatacggacacggacac 45451551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 46348479 - 46348323
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcc 398  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||         ||| |||||| |||||||||| |||||| |||| |     
T  46348479 tatgaagcacggatacggacacggacactgacacgccgacacagctaataatttg---aaaaaatcatataatttagtgtaattacaagtgtcggtgtc- 46348384  T
Q  399 tgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
     | |||||||||  ||||||| | | ||||||||| | |||||| |||||||||||||||||    
T  46348383 -ggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 458
Target Start/End: Complemental strand, 1486788 - 1486646
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---acacgacacaa 412  Q
    |||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||| |||| | |||   |||||||||      
T  1486788 gacacggatactgacacgctgacacagctaataatttgaaaaaa---tcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgt 1486692  T
Q  413 gtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    ||||||| | | ||||||||||| |||||||||||| |||||||||    
T  1486691 gtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 22515964 - 22515827
Alignment:
Q  318 cacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccg 417  Q
    ||||||||| ||||||| ||||||||||||||||||         |||||||||| |||||||||| |||||| |||| |  | ||||||||||  ||||    
T  22515964 cacggacacggacacgcagacacagctaataatttgaaaaaa---tcacataatttagtgtaattacaagtgtcggtgtc--ggacacgacacatatccg 22515870  T
Q  418 acgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    || | | ||||||||||| ||||||||||||||||||||||||    
T  22515869 acaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 18556548 - 18556498
Alignment:
Q  303 aagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18556548 aagcacggatacggacacggacactgacacgccgacacagctaataatttg 18556498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 37598792 - 37598950
Alignment:
Q  297 tctatgaagcacggatacggacac-ggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||||| ||||||| || ||||| |||||||||||||| |||||| |||||||||||         ||||| ||||||||||||||| |||||| ||||    
T  37598792 tctatgacgcacggacacagacaccggacactgacacgccgacacaactaataatttgaaaaaa---tcaca-aattcagtgtaattataagtgtcggtg 37598887  T
Q  396 gcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
     |  | |||||||||  |||||||   | ||||||||||| ||||||||||||||||||||||||    
T  37598888 tc--ggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 1815281 - 1815376
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||||||||||||| |||||| |||| ||   |||||||||| ||||||| | | ||||||||||| | |||||||| ||||| |||||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtgtccg--acacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatag 1815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 317 - 458
Target Start/End: Complemental strand, 42359527 - 42359391
Alignment:
Q  317 acacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtcc 416  Q
    ||||||||||||||||||||||||| |||||||||||         ||||| ||||||||||||||| |||||| |||| |  | ||| |||    ||||    
T  42359527 acacggacactgacacgctgacacatctaataatttg---aaaaaatcacaaaattcagtgtaattacaagtgtcggtgtc--ggacaagacgtgtgtcc 42359433  T
Q  417 gacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    ||| | | ||||||||||| ||||||||||||||||||||||    
T  42359432 gacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 18337353 - 18337448
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||||||||||||| |||||| |||| |  | |||| ||||  ||||||| | | |||| |||| | ||||||||||||||||||||||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtgtc--ggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 465
Target Start/End: Original strand, 51409980 - 51410149
Alignment:
Q  297 tctatgaagcacggatacggacacggacact-----gacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgtt 391  Q
    ||||||||||||||||||||||||||||||      |||| || |||||| |||||||||||         ||||||||||||||||||||| ||||||     
T  51409980 tctatgaagcacggatacggacacggacacaaaacggacatgccgacacatctaataatttgaaaaaaa--tcacataattcagtgtaattacaagtgtc 51410077  T
Q  392 ggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagattat 465  Q
    |||| |  | |||||||||   |||||| | | ||||||||||| || |||||| | |||||||||||| ||||    
T  51410078 ggtgtc--ggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcataggttat 51410149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 464
Target Start/End: Original strand, 5944261 - 5944417
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---------acacg 406  Q
    ||||| ||||||||||||| | ||||||||||||||||         ||||||||||||||||||||| |||||| |||| | |||         ||||     
T  5944261 gacacagacactgacacgccgccacagctaataatttgaaaaaaaa-tcacataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacaca 5944359  T
Q  407 acacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatta 464  Q
    ||||| ||||||| | | || |||||||| ||||||||||| ||||||||||||||||    
T  5944360 acacatgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagatta 5944417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 14359623 - 14359563
Alignment:
Q  298 ctatgaagcacggatacggacacg-----gacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||||     ||||| ||||||| ||||||||||||||||||    
T  14359623 ctatgaagcacggatacggacacgacacagacacggacacgccgacacagctaataatttg 14359563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 6427313 - 6427367
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||| |||| |||||||||||||||||  |||| ||||||||||||    
T  6427313 ctatgaagcacggacacgg-cacggacactgacacgccaacaccgctaataatttg 6427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 21366027 - 21365992
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21366027 gacacgcctaatccgaggagtgtccgtgcttcatag 21365992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 22947814 - 22947849
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22947814 gacacgcctaatccgaggagtgtccgtgcttcatag 22947849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 35702577 - 35702542
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35702577 gacacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 47989592 - 47989627
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47989592 gacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 6427425 - 6427478
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||| ||||||||||||| ||||||||| || |||||| |||||||||||    
T  6427425 tatgaagcatggatacggacacg-acactgacatgccgacacaactaataatttg 6427478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 9828116 - 9828174
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||  ||||||| | | |||||| |||| ||||||||||||||||||||||||    
T  9828116 acacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 40917821 - 40917879
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||  ||||||| | | ||||||||||| ||||||| ||||||||||||||||    
T  40917821 acacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 398844 - 398807
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  398844 gacacggacactgacacgccgacaccgctaataatttg 398807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 5927419 - 5927382
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  5927419 gacacggacactgacacgctaacactgctaataatttg 5927382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 16297256 - 16297223
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    ||||||||||| ||||||||||||||||||||||    
T  16297256 gacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 40917731 - 40917768
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  40917731 gacacggatactgacacgccgacacagctaataatttg 40917768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 48040541 - 48040504
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  48040541 gacacggacactgacacgccgacacagataataatttg 48040504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 48450666 - 48450629
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||  |||||||||||||||||    
T  48450666 gacacggacactgacacgccaacacagctaataatttg 48450629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 2896199 - 2896163
Alignment:
Q  317 acacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2896199 acacggacactgacacgccgacaccgctaataatttg 2896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 10577850 - 10577822
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  10577850 ctatgaagcacggatacggacacggacac 10577822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 25934572 - 25934600
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  25934572 ctatgaagcacggatacggacacggacac 25934600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 29144440 - 29144400
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||| |||||||| |||| ||||||||||||||||||    
T  29144440 acggacactgacactgatacgccgacacagctaataatttg 29144400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 31672988 - 31672937
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||     ||||||||||| | ||||||||||||||||||    
T  31672988 tctatgaagcacggatacgg-----gacactgacacaccgacacagctaataatttg 31672937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 38078771 - 38078743
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  38078771 ctatgaagcacggatacggacacggacac 38078743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 48548077 - 48548049
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  48548077 ctatgaagcacggatacggacacggacac 48548049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 461
Target Start/End: Original strand, 37558939 - 37559097
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc 397  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||         |||||||||||| |||||||| |||||| |||| |    
T  37558939 ctatgaagcacggatacggacacggacactgacacgccgacacagctaataatttg---taaaaatcacataattcaatgtaattacaagtgtcggtgtc 37559035  T
Q  398 ctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
      | ||  |||||  ||||||| | |  |||||| ||| |||||||||||||||||||||||||    
T  37559036 --ggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcataga 37559097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 458
Target Start/End: Complemental strand, 2438754 - 2438661
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    ||||||||||||||||||||| |||||| |||| |  | |||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||    
T  2438754 tcacataattcagtgtaattacaagtgtcggtgtc--ggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 18841115 - 18840953
Alignment:
Q  298 ctatgaagcacggatacggacacg-----gacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttg 392  Q
    |||||||||||| |||||||||||     |||||||||||||||||||| |||||||||||         | |||||||| |||||||||| |||||| |    
T  18841115 ctatgaagcacgtatacggacacgacatggacactgacacgctgacacaactaataatttgaaaaaa---ttacataattaagtgtaattacaagtgtcg 18841019  T
Q  393 gtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||| |    |||||||||| ||||||| | | ||||| ||||| ||||||||||||||||||||||||    
T  18841018 gtgtcag--acacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 36518260 - 36518323
Alignment:
Q  230 cttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgttt 293  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  36518260 cttactggtgtttcatgttttctggtgtgagggttcggctgctgtttgtgcagtggttctgttt 36518323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 460
Target Start/End: Complemental strand, 38117261 - 38117099
Alignment:
Q  299 tatgaagcacggatacggacacgg------acactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttg 392  Q
    |||||||||||||||||||||| |      |||||||||||| ||||||||||||||||||         ||||||| ||| ||||||||| ||||||||    
T  38117261 tatgaagcacggatacggacaccggacacgacactgacacgccgacacagctaataatttgaaaaaa---tcacatacttcggtgtaattacaagtgttg 38117165  T
Q  393 gtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||| |  | |||| ||||  ||||||| | | ||||||||||| |||||| |||||||||||||||||    
T  38117164 gtgtc--ggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 26769583 - 26769643
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    |||||||||  ||||||| | | ||||||||||| ||||||||||||||||||||||||||    
T  26769583 acacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 24894370 - 24894444
Alignment:
Q  317 acacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggt 394  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||| ||||||||||||||||    
T  24894370 acacggacactgacacgccgacacagctaataattt---aaaaaaatcacataattcagtgcaattaaaagtgttggt 24894444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 15972853 - 15972992
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    ||||||||||||||||||| ||||||  ||||||||||         | ||| ||||||||||||||| |||||| |||| |  | |||||||||  |||    
T  15972853 gacacggacactgacacgccgacacaattaataatttgaaaaaa---ttacacaattcagtgtaattacaagtgtcggtgtc--ggacacgacacgtgtc 15972947  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||| | ||||| ||||| |||| || ||||||||||||||||    
T  15972948 cgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 459
Target Start/End: Original strand, 28596493 - 28596587
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    |||||||| |||||||||||| |||||| |||| |  | |||||||||  ||||||| |   ||||| ||||| |||||||||||||||||||||||    
T  28596493 tcacataagtcagtgtaattataagtgtcggtgtc--ggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 37419703 - 37419760
Alignment:
Q  297 tctatgaagcacggatacggaca-cggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||  || |||||||||    
T  37419703 tctatgaagcacggatacggacaccggacactgacacgccgacatggcaaataatttg 37419760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 6940235 - 6940271
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6940235 gacacggacactgacacgccgacacagctaataattt 6940271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 19580379 - 19580323
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||| ||||||||||||||||||||||| || | | ||||| ||||||||||    
T  19580379 tctatgaagtacggatacggacacggacactgatacaccgtcacagttaataatttg 19580323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 39323225 - 39323281
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| ||||||| ||||||||||||||||||| |||  ||||| ||||||||||||    
T  39323225 tctataaagcacgaatacggacacggacactgaaacgtcgacaccgctaataatttg 39323281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 21374780 - 21374741
Alignment:
Q  314 cggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  21374780 cggacacggacactaacacgccgacacagctaataatttg 21374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 37419838 - 37419873
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37419838 gacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 460
Target Start/End: Complemental strand, 42511369 - 42511322
Alignment:
Q  413 gtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||| ||| |||||| |||| ||||||||||||||||||||||||    
T  42511369 gtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 30404953 - 30404858
Alignment:
Q  297 tctatgaagcacggatacggaca-----cggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgt 390  Q
    |||||||||||||||||||||||     ||||||||||||||| ||||| | ||||||||||         ||||||||||||||||||||| ||||||    
T  30404953 tctatgaagcacggatacggacatgacacggacactgacacgccgacacggttaataatttg---aaaaaatcacataattcagtgtaattacaagtgt 30404858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 41843402 - 41843444
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgaca 339  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  41843402 tctatgaagcacggatatgaacacggacactgacacgccgaca 41843444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 327
Target Start/End: Complemental strand, 44770236 - 44770206
Alignment:
Q  297 tctatgaagcacggatacggacacggacact 327  Q
    |||||||||||||||||||||||||||||||    
T  44770236 tctatgaagcacggatacggacacggacact 44770206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 12941014 - 12940977
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  12941014 gacacggacactgacacgttgacacaactaataatttg 12940977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 14996303 - 14996266
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||| || ||||||||||||||||||    
T  14996303 gacacggacactgacaagccgacacagctaataatttg 14996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 20539753 - 20539716
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  20539753 gacacggacactgacacgtcgacacagctaataatttg 20539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 27084230 - 27084259
Alignment:
Q  298 ctatgaagcacggatacggacacggacact 327  Q
    ||||||||||||||||||||||||||||||    
T  27084230 ctatgaagcacggatacggacacggacact 27084259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 10535720 - 10535684
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  10535720 gacacgcctaatccgaggagtgttcgtgcttcataga 10535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 11223828 - 11223792
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||| | |||||||||||||||||||||||    
T  11223828 gacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 21374809 - 21374781
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  21374809 ctatgaagcacggatacggacacggacac 21374781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 21624246 - 21624282
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  21624246 gacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 26769461 - 26769489
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  26769461 ctatgaagcacggatacggacacggacac 26769489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 27447116 - 27447088
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  27447116 ctatgaagcacggatacggacacggacac 27447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 27460011 - 27460043
Alignment:
Q  321 ggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||| ||||||||||||||||||    
T  27460011 ggacactgacacgccgacacagctaataatttg 27460043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 29176528 - 29176496
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||||||||||||||||||| |||||||||||    
T  29176528 tcacataattcagtgtaattataagtgttggtg 29176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 36450851 - 36450694
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc 397  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||         ||||| ||||||||||||||| |||||| |||| |    
T  36450851 ctatgaagcacggatacggacacggacactgacacgccgacacaactaataatttg---aaaaaatcacagaattcagtgtaattacaagtgtaggtgtc 36450755  T
Q  398 ctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
      | ||||||| |  ||||||| |   ||||||||||| |||||||||||| |||||||||||    
T  36450754 --ggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 31109616 - 31109560
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| | ||||||||||    
T  31109616 tctatgaagcactgatatggacacggacactgacacgccgacaccgttaataatttg 31109560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 22204603 - 22204655
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  22204603 tatgaagca-ggatacggatacggacactgacacgccgacacaactaataattt 22204655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 22651956 - 22651993
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22651956 gacacggacactgacacgccgacacagctaataatttg 22651993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 29510383 - 29510346
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  29510383 gacacggacactgacacgccgacacagctaataatttg 29510346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 11803333 - 11803389
Alignment:
Q  404 acgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||| ||||||| |||  ||||| |||| ||||||||||||||||||||||||    
T  11803333 acgacacatgtccgacacaggtacacgtctaatccgaggagtgtccgtgcttcatag 11803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 31514937 - 31514973
Alignment:
Q  424 cgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31514937 cgacacgcctaatccgaggagtgtccgtgcttcatag 31514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 5137518 - 5137484
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacac 332  Q
    ||||||||||||||||||||||||||||| |||||    
T  5137518 ctatgaagcacggatacggacacggacacggacac 5137484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 15816116 - 15816058
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||| | |||||| | | ||||||||||| ||||| ||||||||||||||||||    
T  15816116 acacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 25192423 - 25192389
Alignment:
Q  319 acggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||| ||||||||||||||||||    
T  25192423 acggacactgacacgccgacacagctaataatttg 25192389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 25566914 - 25566952
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  25566914 gacacgcctaatccgaggagtgtctgtgcttcatagatt 25566952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 29510268 - 29510226
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagattatta 467  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||    
T  29510268 gacacacctaatccgaggagtgtccgtgcttcataggttatta 29510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 3951645 - 3951616
Alignment:
Q  297 tctatgaagcacggatacggacacggacac 326  Q
    ||||||||||||||||||||||||||||||    
T  3951645 tctatgaagcacggatacggacacggacac 3951616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 13437043 - 13437006
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  13437043 gacatggacactgacacgccgacacagctaataatttg 13437006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 24413676 - 24413647
Alignment:
Q  297 tctatgaagcacggatacggacacggacac 326  Q
    ||||||||||||||||||||||||||||||    
T  24413676 tctatgaagcacggatacggacacggacac 24413647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 5813569 - 5813609
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| |||||||| ||||||| ||||||||||||||||||    
T  5813569 acggatacggacacggacacgccgacacagctaataatttg 5813609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 11927050 - 11927014
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  11927050 gacacgcctaatccgatgagtgtccgtgcttcataga 11927014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 20785574 - 20785546
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  20785574 ctatgaagcacggatacggacacggacac 20785546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 460
Target Start/End: Complemental strand, 5409915 - 5409771
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---acacgacacaa 412  Q
    |||| ||||||||||||||||| |||||||||||||||         ||||||||||||||| ||||| |||||| |||| | |||   |||||||||      
T  5409915 gacatggacactgacacgctgatacagctaataatttgaaaaaa---tcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacacgacacgt 5409819  T
Q  413 gtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||| | | ||||||||||| ||||||||||||||||||||||||    
T  5409818 gtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 460
Target Start/End: Original strand, 15680771 - 15680928
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc 397  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||           |||||||||| |||||||||| |||||| |||| |    
T  15680771 ctatgaagcacggatacggacatggacactgacacgccgacatagctaataatt---aaaaaaaatcacataatttagtgtaattataagtgtcggtgtc 15680867  T
Q  398 ctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
      | |||||||||  ||||||| | | |||||| ||||  |||||||||||||||||||||||    
T  15680868 --ggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 461
Target Start/End: Original strand, 21880178 - 21880272
Alignment:
Q  365 acataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||||||||||| |||||| |||| |  | |||||||||| ||||||| |   ||||||||||| ||||| |||||||||||||||||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtc--ggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 7197394 - 7197340
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataattt 352  Q
    |||||||||||||||||| |||| |||| |||||||| |||||||||||||||||    
T  7197394 ctatgaagcacggatacgaacacagacattgacacgccgacacagctaataattt 7197340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 25791616 - 25791670
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||    
T  25791616 tatgaagcacggatacggacacagacactgacacgccgacaccgctaattatttg 25791670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 460
Target Start/End: Complemental strand, 43027548 - 43027404
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---acacgacacaa 412  Q
    ||||||||||||||||||  ||| ||||||||||||||         ||||||||| |||||||| || |||||| |||| | |||   |||||||||      
T  43027548 gacacggacactgacacggcgacccagctaataatttgaaaaaa---tcacataatgcagtgtaaatacaagtgtcggtgtcgtgtcagacacgacacgt 43027452  T
Q  413 gtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||| | | ||||||||||| |||| |||||||||||||||||||    
T  43027451 gtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 9778524 - 9778629
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgt---acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    |||||||||||||| |||||| |||||| |||| | |||   |||| ||||  ||||||| | | ||||||||||| || ||||||||||||||||||||    
T  9778524 tcacataattcagtataattacaagtgtcggtgtcgtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcata 9778623  T
Q  460 gattat 465  Q
    | ||||    
T  9778624 ggttat 9778629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 12010057 - 12010022
Alignment:
Q  318 cacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||||||||||||||||    
T  12010057 cacggacactgacacgctgacacagctaataatttg 12010022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 18215283 - 18215228
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||| | |||||||||||| |||||| ||| ||||||||||||||    
T  18215283 ctatgaagcacggatgcagacacggacactaacacgccgacgcagctaataatttg 18215228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 24105658 - 24105695
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  24105658 gacacggacactgacacgccgacacagctaataatttg 24105695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 24339622 - 24339775
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---------acacg 406  Q
    |||| ||||| |||||||| ||||||||||||||||||         ||||||||||||||||||||| |||||| |||| | |||         |||||    
T  24339622 gacatggacattgacacgccgacacagctaataatttgaaaaaa---tcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacg 24339718  T
Q  407 acacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
    ||||   |||||| | | ||||||||||| |||||||||| ||||||||||||||||    
T  24339719 acacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagatt 24339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 11072260 - 11072315
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||| ||||||||||||| |||| ||||||| ||||| | ||||||||||    
T  11072260 ctatgaagcatggatacggacacgaacacagacacgccgacaccgataataatttg 11072315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 19213772 - 19213807
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacac 332  Q
    |||||||||||||||| |||||||||||||||||||    
T  19213772 tctatgaagcacggatgcggacacggacactgacac 19213807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 26019728 - 26019673
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||||||  ||||||||| | ||| |||| |||||||    
T  26019728 ctatgaagcacggatacggacacggatcctgacacgccggcaccgctagtaatttg 26019673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 29763164 - 29763129
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29763164 gacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 32308082 - 32308137
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    |||||||||||  ||||| ||| |||||||||||||| ||||| ||||||||||||    
T  32308082 ctatgaagcacaaatacgaacatggacactgacacgccgacaccgctaataatttg 32308137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 35862035 - 35862070
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35862035 gacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 598269 - 598327
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||  ||||||| | | ||||||||||| ||||| ||||||||||||||||||    
T  598269 acacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 11665536 - 11665482
Alignment:
Q  300 atgaagcacggatacggacac-ggacactgacacgctgacacagctaataatttg 353  Q
    |||||| |||||||||||||| ||| | ||||||||||||||| |||||||||||    
T  11665536 atgaagaacggatacggacactggatattgacacgctgacacaactaataatttg 11665482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 25481887 - 25481958
Alignment:
Q  321 ggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||| |||||||| ||||||||||||||||||         ||||||||||||||||||||| |||||||||||    
T  25481887 ggacaatgacacgccgacacagctaataatttgaaaaaa---tcacataattcagtgtaattacaagtgttggtg 25481958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 27945104 - 27945142
Alignment:
Q  427 cacgcctaagccgaggagtgtccgtgcttcatagattat 465  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  27945104 cacgcctaactcgaggagtgtccgtgcttcatagattat 27945142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 30813882 - 30813916
Alignment:
Q  426 acacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||| ||||||||||||||||||||||||    
T  30813882 acacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 11061155 - 11061118
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  11061155 gacacggacactgacacaccgacacagctaataatttg 11061118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 459
Target Start/End: Original strand, 20549815 - 20549909
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    |||| |||||||||||||||| | |||| |||| |  | |||| ||||| |||||||   | ||||||||||| |||||||||| ||||||||||||    
T  20549815 tcacgtaattcagtgtaattatatgtgtcggtgtc--ggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 37742486 - 37742539
Alignment:
Q  299 tatgaagcacggatacggacacggacactgacacgctgacacagctaataattt 352  Q
    |||||| ||||||||| ||||||||||||| ||||| |||||  ||||||||||    
T  37742486 tatgaaacacggatacagacacggacactgccacgccgacaccactaataattt 37742539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 13770671 - 13770707
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    |||||||||||||| |||| |||||||||||||||||    
T  13770671 gacacggacactgatacgccgacacagctaataattt 13770707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 29812777 - 29812741
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacg 333  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  29812777 tctatgaagcacggacacggacacggacacagacacg 29812741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 14674231 - 14674286
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  14674231 ctatgaagcacggatacagacacggacactgacacgccgacacagctaataatttg 14674286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 458
Target Start/End: Complemental strand, 21191135 - 21190998
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    |||||||||||||||| || ||||||||||||||||||         ||||||||||||||||||||| |||||| |||| |  | |||| ||||  |||    
T  21191135 gacacggacactgacatgccgacacagctaataatttgaaaaaa---tcacataattcagtgtaattacaagtgtcggtgtc--ggacacaacacgtgtc 21191041  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
    |||| | | ||||||||||| ||||||||||||||||||||||    
T  21191040 cgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 458
Target Start/End: Original strand, 43001761 - 43001922
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtgg 396  Q
    ||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||         | ||||||||||||||||||| |||||||||||     
T  43001761 tctatgaagcacggatacggacacggacactgacatgtcgacactgctaataatttg---aaaaaattacataattcagtgtaattacaagtgttggtga 43001857  T
Q  397 cctgt---acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcat 458  Q
      |||   |||||||||  |||  || |   ||||||||||| ||||||||||||||||||||||    
T  43001858 tgtgtcggacacgacacgtgtcaaacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 43564845 - 43565000
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtgg 396  Q
    |||||||| |||||||||||||||| |||||||||||| |||||| |  ||||||||         |||||||||| |||||||||| |||||| ||||     
T  43564845 tctatgaa-cacggatacggacacgaacactgacacgccgacacatc--ataatttggaaaaa---tcacataatttagtgtaattataagtgtcggtgt 43564938  T
Q  397 cctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |  | ||||||||   ||||||||| | ||||||||||| ||||| ||||||||||||||||||    
T  43564939 c--ggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 363 - 460
Target Start/End: Complemental strand, 21576780 - 21576685
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||||||||||||| |||||| | || |  | |||||||||  ||| ||| | | ||||||||||| ||||||||||||||||||||||||    
T  21576780 tcacataattcagtgtaattacaagtgtcgatgtc--ggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 39698518 - 39698592
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgt 390  Q
    ||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||    
T  39698518 acggatacggacactgacacgctgacacagctaataatttg---aaaaaatcacataattcagtgtaattacaagtgt 39698592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 22013394 - 22013431
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22013394 gacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 22423799 - 22423762
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  22423799 gacacgcctaatccgaggagtgtccgtgcttcatagat 22423762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 21522730 - 21522766
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21522730 gacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 21533296 - 21533332
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| |||||||||||||||||    
T  21533296 gacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 6035445 - 6035500
Alignment:
Q  298 ctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||  ||||  ||||||||||||| ||||| ||||||||||||    
T  6035445 ctatgaagcacggatatagacaaagacactgacacgccgacaccgctaataatttg 6035500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 10298634 - 10298669
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10298634 gacacgcctaatccgaggagtgtccgtgcttcatag 10298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 14873606 - 14873641
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14873606 gacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 448
Target Start/End: Original strand, 15382457 - 15382592
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggc----ctgtacacgacaca 411  Q
    |||||||||| |||||||| ||||||||||||||||||         ||| |||||||||| |||||| |||||| |||| |     || ||||||||||    
T  15382457 gacacggacaatgacacgccgacacagctaataatttg-aaaaaaaatcatataattcagtataattacaagtgtcggtgtcggtgttggacacgacaca 15382555  T
Q  412 agtccgacgcagcgacacgcctaagccgaggagtgtc 448  Q
     ||||||| | | ||||||||||| ||||||||||||    
T  15382556 tgtccgacaccgggacacgcctaatccgaggagtgtc 15382592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 17123131 - 17123166
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17123131 gacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 35017127 - 35017162
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35017127 gacacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 39698636 - 39698671
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39698636 gacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 460
Target Start/End: Complemental strand, 21194158 - 21194063
Alignment:
Q  363 tcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||| |||||||||||||| | || ||||||   || |||||||||| ||| ||| | | | ||||||||| ||||||||||||||||||| ||||    
T  21194158 tcacatcattcagtgtaattataggtattggtgt--tggacacgacacatgtcagacaccggggcacgcctaatccgaggagtgtccgtgctttatag 21194063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 3966467 - 3966520
Alignment:
Q  301 tgaagcacggatacggacac-ggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||    
T  3966467 tgaagcacggacacggacactggacactgacatgccgacaccgctaataatttg 3966520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 19552622 - 19552585
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  19552622 gacacggacactgacacgccgacacagttaataatttg 19552585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 36642841 - 36642804
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  36642841 gacacggacactgacacgccgacacagttaataatttg 36642804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 4105343 - 4105379
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  4105343 gacacgcctaatccgaggagtgtccgtgcttcgtaga 4105379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 6770523 - 6770559
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  6770523 gacacggacactgacacactgacacaactaataattt 6770559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 7175117 - 7175061
Alignment:
Q  297 tctatgaagcacggatacggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||| |||||| |||||||||||||||||   ||||| | ||||||||||    
T  7175117 tctatgaagcatggatacagacacggacactgacacatcgacaccgttaataatttg 7175061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 15382421 - 15382449
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  15382421 ctatgaagcacggatacggacacggacac 15382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 15410527 - 15410491
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataattt 352  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  15410527 gacacggacactgacacgccgacaccgctaataattt 15410491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 19579682 - 19579718
Alignment:
Q  317 acacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  19579682 acacggacactgatacgccgacacagctaataatttg 19579718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 19820363 - 19820327
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcataga 461  Q
    ||||||||||| | |||||||||||||||||||||||    
T  19820363 gacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 467
Target Start/End: Complemental strand, 32766893 - 32766865
Alignment:
Q  439 gaggagtgtccgtgcttcatagattatta 467  Q
    |||||||||||||||||||||||||||||    
T  32766893 gaggagtgtccgtgcttcatagattatta 32766865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 39268573 - 39268541
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttca 457  Q
    ||||||||||| |||||||||||||||||||||    
T  39268573 gacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 41995417 - 41995445
Alignment:
Q  300 atgaagcacggatacggacacggacactg 328  Q
    |||||||||||||||||||||||||||||    
T  41995417 atgaagcacggatacggacacggacactg 41995445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 51784 - 51864
Alignment:
Q  309 ggatacggacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttg 392  Q
    |||||||||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||| ||||||||    
T  51784 ggatacggacacggacactgacacgccgacacagctaataatttg---aaaaaatcacataattcagtgtaattacaagtgttg 51864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 462
Target Start/End: Original strand, 8778 - 8919
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtc 415  Q
    ||||||||||||||||||| ||||||||||||||||||         ||| || ||| |||||||||| |||||| |||| |  | |||||||||  |||    
T  8778 gacacggacactgacacgccgacacagctaataatttg---aaaaaatcatattatttagtgtaattacaagtgtcggtgtc--ggacacgacacgtgtc 8872  T
Q  416 cgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagat 462  Q
    |||| | | ||||||||||| | ||||||| ||||||||||||||||    
T  8873 cgacaccgagacacgcctaatctgaggagtctccgtgcttcatagat 8919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 464
Target Start/End: Original strand, 241574 - 241728
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgt---------acacg 406  Q
    ||||||||||||||||||| ||||||||||||||||||         |||||||||| ||||||||||  ||||| |||| | |||         |||||    
T  241574 gacacggacactgacacgccgacacagctaataatttggaaaaa---tcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacg 241670  T
Q  407 acacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatagatta 464  Q
    ||||  ||||||| | | ||||||||||| ||||| ||||||||||||||||||||||    
T  241671 acacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagatta 241728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 459
Target Start/End: Complemental strand, 539 - 403
Alignment:
Q  318 cacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtggcctgtacacgacacaagtccg 417  Q
    |||||||||||| |||| ||||| ||||||||||||         ||||| ||||||||||||||| |||||| |||| |  | ||||||| |  |||||    
T  539 cacggacactgatacgccgacactgctaataatttgaaaaaa---tcacaaaattcagtgtaattacaagtgtcggtgtc--ggacacgacgcgtgtccg 445  T
Q  418 acgcagcgacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    || | | ||||| ||||| |||||||||||||||||||||||    
T  444 acaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 46740 - 46776
Alignment:
Q  424 cgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||||| ||||||||||||||||||||||||    
T  46740 cgacacgcctaatccgaggagtgtccgtgcttcatag 46776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 3392 - 3427
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3392 gacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 20152 - 20223
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgt 390  Q
    |||||||||| |||||||| ||||||||||||||||||         ||||||||||||||||||||| ||||||    
T  20152 gacacggacaatgacacgccgacacagctaataatttg---aaaaaatcacataattcagtgtaattacaagtgt 20223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 3836 - 3778
Alignment:
Q  402 acacgacacaagtccgacgcagcgacacgcctaagccgaggagtgtccgtgcttcatag 460  Q
    |||||||||| |||||||   | ||||||||||| ||||||||||||| ||||||||||    
T  3836 acacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcatag 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 23730 - 23826
Alignment:
Q  298 ctatgaagcacggatacggacac-ggacactgacacgctgacacagctaataatttgnnnnnnnnntcacataattcagtgtaattaaaagtgttggtg 395  Q
    ||||||| |||||||||| |||| |||||||||||| ||| ||||| ||||||||||         ||||||||||||||||||||| |||||| ||||    
T  23730 ctatgaaacacggatacgaacaccggacactgacacactgtcacagttaataatttg--aaaaaaatcacataattcagtgtaattacaagtgtcggtg 23826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 71678 - 71740
Alignment:
Q  297 tctatgaagcacggatacggaca-cg-----gacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||||||| ||     ||||||||||||| ||||||||||||||||||    
T  71678 tctatgaagcacggatacggacatcggacacgacactgacacgccgacacagctaataatttg 71740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 459
Target Start/End: Original strand, 92906 - 92940
Alignment:
Q  425 gacacgcctaagccgaggagtgtccgtgcttcata 459  Q
    ||||||||||| |||||||||||||||||||||||    
T  92906 gacacgcctaatccgaggagtgtccgtgcttcata 92940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 92784 - 92824
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| |||||||||||||||| ||||| ||||||||||||    
T  92784 acggatacggacactgacacgccgacaccgctaataatttg 92824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 8598 - 8561
Alignment:
Q  426 acacgcctaagccgaggagtgtccgtgcttcatagatt 463  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8598 acacgcctaattcgaggagtgtccgtgcttcatagatt 8561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 13380 - 13417
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  13380 gacacggacactgacacgccgacacaactaataatttg 13417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 23370 - 23399
Alignment:
Q  297 tctatgaagcacggatacggacacggacac 326  Q
    ||||||||||||||||||||||||||||||    
T  23370 tctatgaagcacggatacggacacggacac 23399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 21947 - 21910
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  21947 gacacggacactgacacgccgacacaactaataatttg 21910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 178898 - 178861
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  178898 gacacggacactgacacgccgacacaactaataatttg 178861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 225347 - 225310
Alignment:
Q  316 gacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  225347 gacacggacactgacacgccgacacagataataatttg 225310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 9842 - 9870
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  9842 ctatgaagcacggatacggacacggacac 9870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 2900 - 2940
Alignment:
Q  313 acggacacggacactgacacgctgacacagctaataatttg 353  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  2900 acggatacggacactgacacgctaacatagctaataatttg 2940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 63709 - 63737
Alignment:
Q  298 ctatgaagcacggatacggacacggacac 326  Q
    |||||||||||||||||||||||||||||    
T  63709 ctatgaagcacggatacggacacggacac 63737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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