View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_high_8 (Length: 470)
Name: NF14206_high_8
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_high_8 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 40665211 - 40665672
Alignment:
| Q |
1 |
agtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40665211 |
agtgtactgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgctttcttgaaacg |
40665310 |
T |
|
| Q |
101 |
tgagttcccacctttcatcacttggttttgctagctttgtctaatctttaaactttagtgtcttagaggcattataattttacattttgaatatgttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40665311 |
tgagttcccacctttcatcacttggttttgctagctttgtctaatctttaaactttagtttcttagaggcattataattttacattttgaatatgttata |
40665410 |
T |
|
| Q |
201 |
tgtatatgttaatcttt--gcacaagtcttaacttttttaatgtatgtaatttacagcgtatttcgtggaagcttatcgtcccgtcagaaaaggagatct |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665411 |
tgtatatgttaatctttttgcacaagtcttaacttttttaatgtatataatttacagcctatttcgtggaagcttatcgtcccgtcagaaaaggagatct |
40665510 |
T |
|
| Q |
299 |
atttcttgtgcggggagggatgagaagtgtagagtttaaggtcattgaaactgatcctggggagttctgtgtggttgctccagacactgaggtcttctgt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
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| T |
40665511 |
atttcttgtgcggggagggatgagaagtgtagagtttaaggtcattgaaactgatcctggtgagtactgtacggttgctccagacactgagatcttctgt |
40665610 |
T |
|
| Q |
399 |
gagggggaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgt |
460 |
Q |
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| T |
40665611 |
gagggggaacctgtgaaaagagatgatgaagaaagacttgatgaagttggttatgatgatgt |
40665672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 200 - 460
Target Start/End: Complemental strand, 40724641 - 40724382
Alignment:
| Q |
200 |
atgtatatgttaatctttgcacaagtcttaacttttttaatgtatgtaatttacagcgtatttcgtggaagcttatcgtcccgtcagaaaaggagatcta |
299 |
Q |
| |
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|||||||| || ||| ||||||||||| ||||||||| |||||| ||||||||||| |||||| |||| |||||| |||| |||||||||||||||||| |
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| T |
40724641 |
atgtatatttttgtctctgcacaagtct-aacttttttgatgtatctaatttacagcctatttcttggaggcttattgtccggtcagaaaaggagatcta |
40724543 |
T |
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| Q |
300 |
tttcttgtgcggggagggatgagaagtgtagagtttaaggtcattgaaactgatcctggggagttctgtgtggttgctccagacactgaggtcttctgtg |
399 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
40724542 |
tttcttgtgcggggagggatgagaagtgtagaatttaaggtcaatgaaactgatcctggggagttctgtgcggttgctccagacactgaggtcttctgcg |
40724443 |
T |
|
| Q |
400 |
agggggaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgt |
460 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
40724442 |
agggggaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgt |
40724382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 40725333 - 40725193
Alignment:
| Q |
1 |
agtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacg |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40725333 |
agtgtactgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgctttcttgaaacg |
40725234 |
T |
|
| Q |
101 |
tgagttcccacctttcatcacttggttttgctagctttgtc |
141 |
Q |
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| T |
40725233 |
tgagttcccacctttcatcacttggttttgctagctttgtc |
40725193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 109452 - 109551
Alignment:
| Q |
7 |
ctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacgtgagtt |
106 |
Q |
| |
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|||||||||| ||||| || | || |||||||| || | |||||||| |||||||| | ||||| |||||||||||||||| ||| ||||||||||| |
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| T |
109452 |
ctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgatactattgaaggagttactgggaatctctttgatgcatacttaaaacgtgagtt |
109551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 41093844 - 41093745
Alignment:
| Q |
7 |
ctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacgtgagtt |
106 |
Q |
| |
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|||||||||| ||||| || | || |||||||| || | |||||||| |||||||| | ||||| |||||||||||||||| ||| ||||||||||| |
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| T |
41093844 |
ctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgatactattgaaggagttactgggaatctctttgatgcatacttaaaacgtgagtt |
41093745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 27976071 - 27976174
Alignment:
| Q |
3 |
tgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacgtg |
102 |
Q |
| |
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|||||||||||||| ||||| || || || || ||||| ||| |||||||||| |||||||| | ||||| ||||| |||||||| | ||| || |||| |
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| T |
27976071 |
tgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgatactattgaaggggttactgggaatctatttgatgcttacttaaagcgtg |
27976170 |
T |
|
| Q |
103 |
agtt |
106 |
Q |
| |
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|||| |
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| T |
27976171 |
agtt |
27976174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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