View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_low_11 (Length: 464)
Name: NF14206_low_11
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 1177733 - 1178178
Alignment:
| Q |
1 |
gataaaggccatagtctcatgatctatcacagacccattgatggattcaaacctccctacatcactcttctctcctgtgacggtggcggcgaggagttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
1177733 |
gataaaggccatagtctcatgatctatcacagacccattgatggattcaaacctccctacatcactcttctctcctgcgatggtggcg---aggagttgg |
1177829 |
T |
|
| Q |
101 |
aacgtatctacttctgctccctctttcctggtgatgaaatcgtagaccgaatcgaaacatatggcaattgcaatggtgttttcttcttaaaagcttttta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1177830 |
aacatatctacttctgctccctctttcctggtgatcaattcgtagaccgaattgaaacatatggcaattgcaatggtgttttcttcttaaaagcttttta |
1177929 |
T |
|
| Q |
201 |
taggaattcaactcttggtcacttgattctatggaacccaacaactaaacaggtccaccttataccccctgcaccctcattctgtcactctaagtatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1177930 |
taggaattcaactcttggtcacttgattctatggaacccaacaactaaacaggtccaccttataccccctgcaccctcattctgtcactctaagtatgat |
1178029 |
T |
|
| Q |
301 |
gattccctgtatggtttctgtgcatttaacgacgactgtaacattaatttcaaagttgttagacttcaacaatgtgcacatgttgagaagatgattattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178030 |
gattccctgtatggtttctgtgcatttaacgacgactgtagcattaatttcaaagttgttagacttcaacaatgtgcacatgttgagaagatgattattc |
1178129 |
T |
|
| Q |
401 |
cttcaggcgcagaagtgtatgatctaagcactaaatcatggacccctgt |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178130 |
cttcaggcgcagaagtgtatgatctaagcactaaatcatggacccctgt |
1178178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 6841154 - 6840786
Alignment:
| Q |
3 |
taaaggccatagtctcatgatctatcacagacccattgatggattcaaacctccctacatcactcttctctcctgtgacggtggcggc---gaggagttg |
99 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| ||||| ||||||||| ||| |||||||||||||||||| || | |||||| || |
|
|
| T |
6841154 |
taaaggccatagtctcatgatcattcccagacccattga---attcagacctccctatatcgctcttctctcctgtgacgacctcgaccatgaggaggtg |
6841058 |
T |
|
| Q |
100 |
gaacgtatctacttctgctccctctttcctggtga---tgaaatcgtagaccgaatcgaaacatatggcaattgcaatggtgttttcttcttaaaagctt |
196 |
Q |
| |
|
|| || |||| ||||| |||||||||||||| | | | ||| | || | || ||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6841057 |
gagcgcatctgcttctactccctctttcctgctaacaataaaaccatactcaagattgaatcatatggcaattgcaatggtgttttctttttaaaagctt |
6840958 |
T |
|
| Q |
197 |
tttataggaattcaac---tcttggtcacttgattctatggaacccaacaactaaacaggtccaccttataccc-cctgcaccctcattctgtcactcta |
292 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||||| |||||| || |||| ||| ||| |||||||||||||||| | | |||| |
|
|
| T |
6840957 |
tttattggcattcaacaaatcttggtcacttgattctatggaacccaacagttaaacaagttcaccgtatcccctcctgcaccctcattctctga-tcta |
6840859 |
T |
|
| Q |
293 |
agtatgatgattccctgtatggtttctgtgcatttaacgacgactgtaacattaatttcaaagttgttagacttcaaca |
371 |
Q |
| |
|
| |||||||||||| |||||||||| ||||| ||||| || || | ||||||||||||||||||||||||||| |
|
|
| T |
6840858 |
aatatgatgattccttgtatggtttttgtgcctttaagga------tataaataatttcaaagttgttagacttcaaca |
6840786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University