View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_13 (Length: 459)
Name: NF14206_low_13
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 109 - 447
Target Start/End: Complemental strand, 6312699 - 6312355
Alignment:
| Q |
109 |
agaataagataagatactatatatccaaagttagtgctatggaacatatatagaaagaactaacatttacttgtaaattgtgttcatcattgtttcatag |
208 |
Q |
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| T |
6312699 |
agaataagataagatattatat--ccaaagttagtgctatggaacatatatagaaagaactaacatttacttgtaaattgtgttcatcattgtttcatag |
6312602 |
T |
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| Q |
209 |
agttaaaattatcaatcattatatctgaagtaaattttccacaatttcattttcaatatatgaaccatcatgtaatatcagagnnnnnnnnntcagctac |
308 |
Q |
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| T |
6312601 |
agttaaaattatcaatcattatatctgaagtaaattttccacaatttcattttcaatatatgaaccatcatgtaatatcagag-aaaaaaaatcagctac |
6312503 |
T |
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| Q |
309 |
ttgtgtagctttgattttatattttgcatatatagctgaaaatactcctttacatatgagtaatttgagta---------attttagcaaatatgtaaaa |
399 |
Q |
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| T |
6312502 |
ttgtgtagctttgattttatattttgcatatatagctgaaaatactcctttacatatgagtaatttgagtaatttgttctattttagcaaatatgtaaaa |
6312403 |
T |
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| Q |
400 |
ttctttttggatagtcattggagtgtattttgtttacctccttagtat |
447 |
Q |
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| T |
6312402 |
ttctttttggatagtcattggagtgtattttgtctacttccttagtat |
6312355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 6312756 - 6312722
Alignment:
| Q |
16 |
ataagtatagggaatttaaaaagtttaatttagtt |
50 |
Q |
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| T |
6312756 |
ataagtatagggaatttaaaaagtttaatttagtt |
6312722 |
T |
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