View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_19 (Length: 421)
Name: NF14206_low_19
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 42979661 - 42979793
Alignment:
| Q |
17 |
atatatgacatttgaatcaatcatcctttttatttttcaatgagatcaaaatagtgcaactatagttgagatccaaatgtgaatcaatcatataattagt |
116 |
Q |
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| T |
42979661 |
atatatgacatttgaatcaatcatcctttttattttccaatgagatcaaaacagtgcaactatagttgagatccaaatgtgaatcaatcatataattagt |
42979760 |
T |
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| Q |
117 |
tattttataaatatatcgtttaatcctccaacc |
149 |
Q |
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| T |
42979761 |
tcttttataaatatatcgtttaaccccccaacc |
42979793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 42979993 - 42980043
Alignment:
| Q |
363 |
gggggaaggtgtagatgcaagggtatagagtaaaatttctcaagaattatc |
413 |
Q |
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| T |
42979993 |
gggggaaggtgtagatgcaagggtatagggtaaaatttcccaagaattatc |
42980043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 42979865 - 42979915
Alignment:
| Q |
221 |
gttttccagaaataaaatttgaataagaaatgttaggggtgtattcacgatg |
272 |
Q |
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| T |
42979865 |
gttttccagaaataaaatttgaataagaaatgtta-tggtgtattcacgatg |
42979915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 31656087 - 31655955
Alignment:
| Q |
17 |
atatatgacatttgaatcaatcatcctttttatttttcaatgagatcaaaatagtgcaactatagttgagatccaaatgtgaatcaatcatataattagt |
116 |
Q |
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| T |
31656087 |
atatatgacatttgaatcgatcatcctttttattttccaatgagatcaaaacagtgcaactatagttgagatccaaatgtgaatcaatcatataattagt |
31655988 |
T |
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| Q |
117 |
tattttataaatatatcgtttaatcctccaacc |
149 |
Q |
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||||||||||||||||||||||| || |||||| |
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| T |
31655987 |
tattttataaatatatcgtttaaccccccaacc |
31655955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 31655883 - 31655832
Alignment:
| Q |
221 |
gttttccagaaataaaatttgaataagaaatgttaggggtgtattcacgatg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31655883 |
gttttccagaaataaaatttgaataagaaatgttaggggtgtattcatgatg |
31655832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 31654953 - 31654903
Alignment:
| Q |
363 |
gggggaaggtgtagatgcaagggtatagagtaaaatttctcaagaattatc |
413 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
31654953 |
gggggaaggtgtagatgcaagggtatagggtaaaatttcccaagaattatc |
31654903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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