View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_low_2 (Length: 905)
Name: NF14206_low_2
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 790; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 18 - 888
Target Start/End: Original strand, 48365590 - 48366464
Alignment:
| Q |
18 |
cattcgatgttggcgatcgttgtgttgtagatggtgttgaggtaacttatagcagccgaatttatttttactgttttgagattcacgtattaatgcatcg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365590 |
cattcgatgttggcgatcgttgtgttgtagatggtgttgaggtaacttatagcagccgaatttatttttactgttttgagattcacgtattaatgcatcg |
48365689 |
T |
|
| Q |
118 |
aattatctggcagctattggttgaagaaatgaatatattgacaacagtattcttgaagcttaataatgaaaaggtgtattatccaaactctgtcctcgcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365690 |
aattatctggcagctattggttgaagaaatgaatatattgacaacagtattcttgaagcttaataatgaaaaggtgtattatccaaactctgtcctcgcc |
48365789 |
T |
|
| Q |
218 |
actaaaccgattagcaattattacagaagcccaaatatggctgaaggtatagagttctcggttgattttacgacaccagcagaaaaaattggagcattga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48365790 |
actaaaccgattagcaattattacagaagcccaaatatggctgaaggtatagagttctcggttgattttacgacaccagcagagaaaattggagcattga |
48365889 |
T |
|
| Q |
318 |
aggaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctttgatcttaagatttctatgtatttctttgttgta |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48365890 |
aagaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctttaatcttaagatttctatgtatttctttgttgta |
48365989 |
T |
|
| Q |
418 |
atgttttgtttnnnnnnnnnnnnn---taggtacgcggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgta |
514 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48365990 |
atgttttgtttaaaaataaataaaaaataggtacgcggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgta |
48366089 |
T |
|
| Q |
515 |
aataagattaagatgggtctttatgttactcacacaatgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48366090 |
aataagattaagatgggtctttatgttactcacacaatgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaa |
48366189 |
T |
|
| Q |
615 |
gaatatttgaagagctcaatatcagatacagccttcttccacaaggtgttcatctcagacacatagaatctgatacaagttctctcaaatgatgactgca |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
48366190 |
gaatatttgaagagctcaatatcagatacagccttcttccacaaggtgttcatctcagacacatagaacctgacacaagttctctcaaatgatgactgca |
48366289 |
T |
|
| Q |
715 |
tcgtatgtgctccttttgtttctttggtttgtcaattcatgagttat-gtatgagtgttgagactggttcaatataaatagagtgaaaataaaggcctta |
813 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48366290 |
tcgtatgtgctccttttgtttctttggtttgtcgattcatgagttatagtatgagtgttgagactggttcaatataaatagagtgaaaataaaggcctta |
48366389 |
T |
|
| Q |
814 |
acagagagtgttggcaatacttatgtaccaaccttgtagtggaaccaatgtaaaatttcgtcctaaggttgaact |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48366390 |
acagagagtgttggcaatacttatgtaccaaccttgtagtggaaccaatgtaaaatttcgtcctaaggttgaact |
48366464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 709
Target Start/End: Original strand, 48385133 - 48385814
Alignment:
| Q |
20 |
ttcgatgttggcgatcgttgtgttgtagatggtgttgaggtaacttat--agcagccgaatttatttttactgttttgagattcacgtattaatgcatcg |
117 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||| | ||| |||||||||| |||| |||| ||||||||||||||||||| | |
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|
| T |
48385133 |
ttcgatgttggcgatcggtgtgttatagatggtgttgaggtaacttctgtagctgccgaatttaattttgttgtta-gagattcacgtattaatgccttt |
48385231 |
T |
|
| Q |
118 |
-aattatctggcagctattggttgaagaaatgaatatattgacaacagtattcttgaagcttaataatgaaaaggtgtattatccaaactctgtcctcgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48385232 |
taattatctggcagctattggttgaagagatgaatatattgacaacagtattcttgaagcttaataatgaaaagttgtattatccaaactctgtcctcgc |
48385331 |
T |
|
| Q |
217 |
cactaaaccgattagcaattattacagaagcccaaatatggctgaaggtatagagttctcggttgattttacgacaccagcagaaaaaattggagcattg |
316 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||| || |
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|
| T |
48385332 |
ctctaaaccgattagcaattattacagaagcccaaatatggttgaaaaggtagagttctcggttgattttacgacaccagcagagaaaattggggcactg |
48385431 |
T |
|
| Q |
317 |
aaggaaaaaataacgaggtaagctactgaaaagttttatcacaaatttggaacaactcttgttgctttgatcttaagatttctatgtatttctttgttgt |
416 |
Q |
| |
|
|| |||||| | | ||||||||||| || ||||||||| |||||||||||| |||| |||| | |||||| ||||| ||| ||||||||||| | |
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|
| T |
48385432 |
aaagaaaaagtgaagaggtaagctagtg--gagttttatcctcaatttggaacaagtcttattgccgtaatcttagtatttcaatgaatttctttgttct |
48385529 |
T |
|
| Q |
417 |
aatgttttgtttnnnnnnnnnnnnntaggtacgcggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgtaaa |
516 |
Q |
| |
|
||||| || || |||||| ||||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||| |
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|
| T |
48385530 |
aatgtcttttt--------caaaactaggtatttggagaagaatccacaatactggcatcctaattttggattggtagtgaaggagattgaaaatgtaaa |
48385621 |
T |
|
| Q |
517 |
taagattaagatgggtctttatgttactcacacaatgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaaga |
616 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||| |||||||| || | | |
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|
| T |
48385622 |
taatattaagatgggtctttttgttactcacacaatgaattttcaagagtttggagagaagaccaagcggagaagtgaactagtaatggaagtaaagaaa |
48385721 |
T |
|
| Q |
617 |
atatttgaagagctcaatatcagatacagccttcttccacaaggtgttcatctcagacacatagaatctgatacaagttctctcaaatgatga |
709 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||| |
|
|
| T |
48385722 |
atatttgaagatctcaatataagatacaaccttcttccacaaggtgttcatctcagacacatggaacctgatgcaagttatctcaaatgatga |
48385814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 48396981 - 48396656
Alignment:
| Q |
18 |
cattcgatgttggcgatcgttgtgttgtagatggtgttgaggtaacttatagcagccgaatttatttttactgttttgagattcacgtattaatgcatcg |
117 |
Q |
| |
|
|||| |||||||||||||| ||| || |||||||||||||||||| ||||||||||||| |||| |||| |||||||| ||| ||||||||||||| |
|
|
| T |
48396981 |
catttgatgttggcgatcgatgttttatagatggtgttgaggtaatttatagcagccgagtttaactttattgttttgatatttgcgtattaatgcattc |
48396882 |
T |
|
| Q |
118 |
aa--ttatctggcagctattggttgaagaaatgaatatattgacaacagtattcttgaagcttaataatgaaaaggtgtattatccaaactctgtcctcg |
215 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48396881 |
aaaattatcttgcagctattggttgaagaaatgaacatactgacaacagtattcttgaaacttaataatgaaaaggtgtattatccaaactctgtcctag |
48396782 |
T |
|
| Q |
216 |
ccactaaaccgattagcaattattacagaagcccaaatatggctgaaggtatagagttctcggttgattttacgacaccagcagaaaaaattggagcatt |
315 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||| ||| || |||||||||| ||||||||||| || ||||||| ||||| ||| || | |
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|
| T |
48396781 |
ccataaaaccgatcagcaattattacagaagccctaatatgggtgacagtgtagagttctcagttgattttacaacgtcagcagagaaaatcggatcact |
48396682 |
T |
|
| Q |
316 |
gaaggaaaaaataacgaggtaagcta |
341 |
Q |
| |
|
||| |||||||||| ||||||||||| |
|
|
| T |
48396681 |
gaatgaaaaaataaagaggtaagcta |
48396656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 451 - 709
Target Start/End: Complemental strand, 48396525 - 48396267
Alignment:
| Q |
451 |
ggagaggaatccacaatactggcatcctaatttcagcttggtagtaatagagattgaaaatgtaaataagattaagatgggtctttatgttactcacaca |
550 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48396525 |
ggagaggaatccacaatactggcatcctagtttcagtttggcagtgaaggagattgaaaatgtaaataagattaagatgggtctttatgttactcacaca |
48396426 |
T |
|
| Q |
551 |
atgaactttcaagagtttggagagaaggtgaataggaaaagtgaactagtgatggaagttaaaagaatatttgaagagctcaatatcagatacagccttc |
650 |
Q |
| |
|
|||||||||||||| ||||| |||||| || ||| ||||||| ||||||||||||| || | |||||||||||||||||||||||||||| |||| |
|
|
| T |
48396425 |
atgaactttcaagaatttggggagaagactaagcggagaagtgaattagtgatggaagtaaagaaaatatttgaagagctcaatatcagatactacctta |
48396326 |
T |
|
| Q |
651 |
ttccacaaggtgttcatctcagacacatagaatctgatacaagttctctcaaatgatga |
709 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||||| |||||| |||||| |||||| |
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|
| T |
48396325 |
ttccgcaaggtgttcatctcagacacatggaacctgattcaagttatctcaagtgatga |
48396267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 646 - 709
Target Start/End: Complemental strand, 33618735 - 33618672
Alignment:
| Q |
646 |
ccttcttccacaaggtgttcatctcagacacatagaatctgatacaagttctctcaaatgatga |
709 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||| || ||||||||| |||||||||||| |
|
|
| T |
33618735 |
ccttattccacaaggtgttcatcttagacacatggaacctaatacaagtttactcaaatgatga |
33618672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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