View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_20 (Length: 413)
Name: NF14206_low_20
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_20 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 25745781 - 25745384
Alignment:
| Q |
16 |
cagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
115 |
Q |
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| T |
25745781 |
cagtaagagcaagaagaaatgaggttttgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
25745682 |
T |
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| Q |
116 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcgaatttcttgcattgttttaaagagcatactgcggcagtcaaagctctt |
215 |
Q |
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| T |
25745681 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgtcaaatttcttgcattgttttaaagagcatactgcggcagtcaaagctctc |
25745582 |
T |
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| Q |
216 |
gattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaagaggaactaacatttgca |
315 |
Q |
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| T |
25745581 |
gattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatgatagatgtattaagttgtggaatgtacaaagaggaaccaacatttgca |
25745482 |
T |
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| Q |
316 |
gcatagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaac |
413 |
Q |
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| T |
25745481 |
gcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctttagtacaagtccagaacacaac |
25745384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 18929202 - 18929053
Alignment:
| Q |
16 |
cagtaagagcaagaagaaatgaggtttcgaggataaaaacacacagagcagaaatctgcggtttaaaatggtcgaaaaggggcaatttattggctagtgg |
115 |
Q |
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|||| |||||||||||||||| |||||| || ||||| |||||| |||| || | |||||||| |||||||||||||| ||||||||||||| ||||| |
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| T |
18929202 |
cagttagagcaagaagaaatgtggtttctcgggtaaaagcacacaaagcataagtttgcggtttgaaatggtcgaaaagcagcaatttattggcaagtgg |
18929103 |
T |
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| Q |
116 |
tggcaatgaaaatcatgtttatgtatgggactcgaataaaatgaactcgt |
165 |
Q |
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| T |
18929102 |
tggcaatgaaaatcacatctatgtgtgggacgcaaataagatgaactcgt |
18929053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 18928709 - 18928633
Alignment:
| Q |
333 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaaca |
409 |
Q |
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| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaaca |
18928633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 36841081 - 36841003
Alignment:
| Q |
331 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaaca |
409 |
Q |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaaca |
36841003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 18929040 - 18929000
Alignment:
| Q |
218 |
ttggtgcccttatgattcagatgtgcttgcttctggaggcg |
258 |
Q |
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| T |
18929040 |
ttggtgcccttatggttcagctgtgcttgcttctgggggcg |
18929000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 4348615 - 4348661
Alignment:
| Q |
370 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaac |
413 |
Q |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaac |
4348661 |
T |
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