View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_21 (Length: 383)
Name: NF14206_low_21
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 34347915 - 34348237
Alignment:
| Q |
17 |
acttggctaggtttgataaggtacatacatgcatgccctagttgaaggatattggttccatgtcactatannnnnnncatccattaatattatcttgatg |
116 |
Q |
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| T |
34347915 |
acttggctaggtttgataaggtacatacatgcatgccctagttgaaggatattggttccatgtcactatatttttttcatccattaatattatcttgatg |
34348014 |
T |
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| Q |
117 |
tccctccaaatgttggtgtccaaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348015 |
tccctccaaatgttggtgtccaaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatc |
34348114 |
T |
|
| Q |
217 |
ttgctttgtgccctcacannnnnnnaatttaccagaattctgcattaataaaatttgtaaaagtgttataagacataaacttggaaggnnnnnnnnntca |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||| ||||| |||||||||||| ||| |
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| T |
34348115 |
ttgctttgtgccctcacatttttttaatttaccagaattctgcatcaataaaatt--ttaaagtgttacaagacgtaaacttggaagaaaaacaaaatca |
34348212 |
T |
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| Q |
317 |
accactcataaggtcgcaatattaa |
341 |
Q |
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||||||||| ||||||||||||||| |
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| T |
34348213 |
accactcatgaggtcgcaatattaa |
34348237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 23872587 - 23872692
Alignment:
| Q |
119 |
cctccaaatgttggtgtccaaaaatcaactgttgtttcatgagtcactggaaatgtgctagaaactggtaccaaacatagtcctcgactttttagatctt |
218 |
Q |
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||||||||||||||||||||| | |||||||| | ||||||||||| ||||||||| |||||||||||||| |||||||| |||| ||| | ||||| | |
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| T |
23872587 |
cctccaaatgttggtgtccaatattcaactgtgggttcatgagtcattggaaatgtactagaaactggtactaaacatagccctctgcttctaagatcct |
23872686 |
T |
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| Q |
219 |
gctttg |
224 |
Q |
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|||||| |
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| T |
23872687 |
gctttg |
23872692 |
T |
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