View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_low_29 (Length: 313)
Name: NF14206_low_29
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_29 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 29090952 - 29091267
Alignment:
| Q |
1 |
ttataggattatcctaaacaactttttgaaacctcgaatccccatttcctgacatgattctcttgtcataggtttctatgtagtagatttctttgataaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29090952 |
ttataggattatcctaaccaactttttgaaacctcgaatccc-atttcctgacatgattctcttgtcataggtttctatatag---atttctttgataaa |
29091047 |
T |
|
| Q |
101 |
gatatt----------tccttatttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggctatccacaataaaa |
190 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29091048 |
gatattcagatagatttctttatttgtacattttcatttttctcatgaaata---gtaaaggcaaagaattgcttctaagttaggctatccacaataaaa |
29091144 |
T |
|
| Q |
191 |
gaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29091145 |
gaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatcat |
29091244 |
T |
|
| Q |
291 |
aacacaaaactactctatattac |
313 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
29091245 |
aagacaaaactactctatattac |
29091267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 29083649 - 29083921
Alignment:
| Q |
22 |
ctttttgaaacctcgaatccccatttcctgacatgattctcttgtcataggtttctatgtagtagatttctttgataaagat----------atttcctt |
111 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||||| |||||||| |
|
|
| T |
29083649 |
ctttttgcaatctcgaatccccatttcctgacatgattttcttgtcataggtttccatatag---atttctttgataaagattttcatatagatttcctt |
29083745 |
T |
|
| Q |
112 |
atttgtacattttcatttttctcatgaaatattagtaaaggcaaagaattgcttctaagttaggctatccacaataaaagaaatactaaacccataaagt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
29083746 |
atttgtacattttcatttttctcatgaaata---gcaaaggcaaagaattgcttctaagttaggctatccacaatataagaaatacttaacccataaagt |
29083842 |
T |
|
| Q |
212 |
tcatt-ttgcggctaagaatttcatcaaagcaaagtaacgttttggttttttaataccaaagaaactcataattcatca |
289 |
Q |
| |
|
| | | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29083843 |
ttaatcttgcggctaagaatttcatcaaagtaaagtaacgttttggttttttaataccaaagaaactcataattcatca |
29083921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University