View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_33 (Length: 297)
Name: NF14206_low_33
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 88 - 276
Target Start/End: Original strand, 16970439 - 16970627
Alignment:
| Q |
88 |
tattgttattggaagcctctaattatttggacccctaacaacatctgcaagcaacataccaccatactattcctttaaaaagcaacttatggccataatc |
187 |
Q |
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| T |
16970439 |
tattgttattggaagcctttaattatttggaccactaacaacatctgcaagcaacataccaccatactattcctttaaaaagcaactaatggccataatc |
16970538 |
T |
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| Q |
188 |
atacaagatttttactcagtatagtagtagagctagccatgttgcattccattgtcttttctgtttccgtattactttgttctgctcgt |
276 |
Q |
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| T |
16970539 |
aaacaagatttttactcagtatagtagtagagctagccatgttgcattccattgtcttttctgtttccgtattactttgttctgctcgt |
16970627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 16964760 - 16964808
Alignment:
| Q |
32 |
attaatatctcaagaaaccaagcccaagactctcttatttcacctttaa |
80 |
Q |
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| T |
16964760 |
attaatttctcaaaaaatcaagcccaagaccctcttatttcacctttaa |
16964808 |
T |
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