View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_39 (Length: 262)
Name: NF14206_low_39
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 32547391 - 32547142
Alignment:
| Q |
1 |
tattttaccatcttattctaaattttattcatattaattaatgatattcttcttggactttagtacaaccttcaccttaccatcttcaaggattcttggt |
100 |
Q |
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| T |
32547391 |
tattttaccatcttattctaaattttattcatattaat----gatattcttcttggattttagtacaaccttcaccttaccatcttcaaggattcttggt |
32547296 |
T |
|
| Q |
101 |
catgaacaatacaatattagtaaactccaatgtctctatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547295 |
catgaacaatacaatattagtaaactccaatgtctctatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttct |
32547196 |
T |
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| Q |
201 |
ccaaacccagctattaaaagaggtacaaatcaagctctgtgatacttggctatg |
254 |
Q |
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|||||||| ||||||||||||||| || | |||||||||||||||||||||| |
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| T |
32547195 |
ccaaacccggctattaaaagaggttcataaacagctctgtgatacttggctatg |
32547142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 32647868 - 32648115
Alignment:
| Q |
1 |
tattttaccatcttattctaaattttattcatattaattaatgatattcttcttggactttagtacaaccttcaccttaccatcttcaaggattcttggt |
100 |
Q |
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| T |
32647868 |
tattttaccatcttattctaaattttgttcatattaat----gatattcttcttgga-taaagtacaaccttcatcttacaatatt-aaggattcttggt |
32647961 |
T |
|
| Q |
101 |
catgaacaatacaatattagtaaactccaatgtctctatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32647962 |
catgaacaatacaatattagtaaactccaatgtctctatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccataatgttttct |
32648061 |
T |
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| Q |
201 |
ccaaacccagctattaaaagaggtacaaatcaagctctgtgatacttggctatg |
254 |
Q |
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| T |
32648062 |
ccaaatccagctattaaaagaggttcataaacagctctgtgatacttggctatg |
32648115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 32552959 - 32552834
Alignment:
| Q |
137 |
tatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttctccaaacccagctattaaaagaggtacaaatcaagct |
236 |
Q |
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||||||||||| ||| || || |||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||| | |||| |||||| |
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| T |
32552959 |
tatctcaatgaattgtgcaattagctttgcaaaccttgagaataattcatccatgacattttcaccaaactcagctattaaaagagattcaaaacaagct |
32552860 |
T |
|
| Q |
237 |
ctgtgatacttggctatggactctcc |
262 |
Q |
| |
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| T |
32552859 |
ctgtgatacttggctatgaactctcc |
32552834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 32549619 - 32549519
Alignment:
| Q |
160 |
gctttgcaaaccttgagaacaattcatccatgatgttttctccaaacccagctattaaaagaggtacaaatcaagctctgtgatacttggctatggactc |
259 |
Q |
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|||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| || | | || ||||||||| ||||||||||||| |||| |
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| T |
32549619 |
gctttgcaaaccttgagaacaattcatccatgatatcttcaccaaactgagctattaaaatagattccaaaaaagctctgtcatacttggctatgaactc |
32549520 |
T |
|
| Q |
260 |
t |
260 |
Q |
| |
|
| |
|
|
| T |
32549519 |
t |
32549519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 253
Target Start/End: Complemental strand, 27879289 - 27879143
Alignment:
| Q |
107 |
caatacaatattagtaaactccaatgtctctatctcaatgagttgagctatcagctttgcaaaccttgagaacaattcatccatgatgttttctccaaac |
206 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||| || || | |||||||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
27879289 |
caatacaatattagtaaactctaatgtctctaactcaatgagctgtgcaagcagctttgcaaatcttgagaacaattcatccatgatattttcaccaaac |
27879190 |
T |
|
| Q |
207 |
ccagctattaaaagaggtacaaatcaagctctgtgatacttggctat |
253 |
Q |
| |
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|| |||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
27879189 |
ccgtctattaaaagaggttcaaaaacagctctgtggtacttggctat |
27879143 |
T |
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